I just tried opening /bundler_sfm/examples/kermit/results.example/bundle.out in MeshLab 1.3.3 (since scanalyze is quite old and difficult to compile) with matches.init.txt as the image list file. The result looks like this, and I can't tell if this is what it should look like:

Furthermore, I tried running bundler in the kermit example folder via ../../RunBundler.sh and opening the resulting .ply file(s), and those are similarly sparse:

An example image of the output we should be seeing would be very helpful, as these results I am seeing don't seem right.