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Description
The query() function returns strain names with spaces intact, as expected:
Returning 0-50 of 65 entries.
> df$virus_name[1]
[1] "hCoV-19/New Caledonie/IPP03868/2022"
However, download() returns strain names with the spaces removed:
> dfseq <- download(credentials=credentials,list_of_accession_ids=df$accession_id[1])
Selecting entries...
Compressing data. Please wait...
Data ready.
Downloading...
tar.exe: Removing leading '/' from member names
> dfseq$strain
[1] "hCoV-19/NewCaledonie/IPP03868/2022"