Package: LTRpred

Type: Package

Title: De novo functional annotation of retrotransposons

Version: 1.1.0

Date: 2020-04-26

Authors@R: as.person(c(

"Hajk-Georg Drost <[email protected]> [aut, cre]"

))

Maintainer: Hajk-Georg Drost <[email protected]>

Description: A de novo functional annotation pipeline to predict potentially active LTR retrotransposons in any genome assembly file.

License: GPL-2

SystemRequirements: C++

VignetteBuilder: knitr

NeedsCompilation: yes

Depends:

R (>= 3.1.1),

Imports:

biomartr (>= 0.5.1),

parallel (>= 3.0.2),

dplyr (>= 0.3.0.2),

GenomicRanges,

GenomeInfoDb,

Biostrings,

stringr (>= 0.6.2),

IRanges,

RColorBrewer,

ggplot2,

readr,

magrittr,

downloader,

BSDA,

ggrepel,

reshape2,

gridExtra,

methods,

tibble,

scales,

ape,

R.utils

Suggests:

knitr (>= 1.6),

rmarkdown (>= 0.3.3),

devtools (>= 1.6.1),

testthat (>= 0.9.1),

roxygen2,

amap,

ggsci,

ggbio

URL: https://github.com/HajkD/LTRpred

BugReports: https://github.com/HajkD/LTRpred/issues

RoxygenNote: 7.1.2