IsoRegNet

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Infers gene and transcript isoform regulation by integrating RNA-seq, epi-genomics data and isoform annotation.

Prepar input

parameter	value	explanation
type	single/paired	Denotes whether single-end or paired-end reads are used.

Name		Name	Last commit message	Last commit date
Latest commit History 9 Commits
Bind.mat		Bind.mat
Bind_T		Bind_T
Compute_StepSize.m		Compute_StepSize.m
Compute_gradient.m		Compute_gradient.m
Compute_groupobj.m		Compute_groupobj.m
Generate_CV_Folds.m		Generate_CV_Folds.m
Ground_Truth		Ground_Truth
Learn_Transcriptome.m		Learn_Transcriptome.m
Optimum_Model_Coefficents		Optimum_Model_Coefficents
Pipeline.png.001.jpeg		Pipeline.png.001.jpeg
README.md		README.md
Run_MTL.m		Run_MTL.m
Task_Features.m		Task_Features.m
Transcript_test.mat		Transcript_test.mat
TranscriptexprTestnew		TranscriptexprTestnew
computeLoss.m		computeLoss.m
cost_function.m		cost_function.m
cross_validation_errGrid		cross_validation_errGrid
do_CV.m		do_CV.m
miRNAExprFileTestscale		miRNAExprFileTestscale
miRNAExprFileTrainscale		miRNAExprFileTrainscale
miRNA_test.mat		miRNA_test.mat
mir.mat		mir.mat
modelSelection.m		modelSelection.m
proxgrad.m		proxgrad.m
proximal.m		proximal.m
scale_features.m		scale_features.m
shrink.m		shrink.m
softhreshould.m		softhreshould.m