This directory contains examples of optimizations that can be performed with BluePyOpt
.
They can be used to learn the concepts behind the package, and also as a starting point for other optimizations
-
expsyn: Example optimization of a synapse (a point process) in NEURON
-
graupnerbrunelstdp: Graupner-Brunel STDP model fitting
-
l5pc: Layer 5 pyramidal neuron parameter optimization
-
simplecell: optimisation of simple single compartmental cell with two free parameters
-
stochkv: simple cell optimization with stochastic channels
-
tsodyksmarkramstp: optimizing parameters of the Tsodyks-Markram model of short-term synaptic plasticity
The expsyn, l5pc and simplecell examples contain an implementation for Arbor as an alternative simulator backend to NEURON.