The RAPIDS cuDF library is a GPU DataFrame manipulation library based on Apache Arrow that accelerates loading, filtering, and manipulation of data for model training data preparation. The RAPIDS GPU DataFrame provides a pandas-like API that will be familiar to data scientists, so they can now build GPU-accelerated workflows more easily.
NOTE: For the latest stable README.md ensure you are on the master
branch.
Please see the Demo Docker Repository, choosing a tag based on the NVIDIA CUDA version you’re running. This provides a ready to run Docker container with example notebooks and data, showcasing how you can utilize cuDF.
It is easy to install cuDF using conda. You can get a minimal conda installation with Miniconda or get the full installation with Anaconda.
Install and update cuDF using the conda command:
# CUDA 9.2
conda install -c nvidia -c rapidsai -c numba -c conda-forge -c defaults cudf
# CUDA 10.0
conda install -c nvidia/label/cuda10.0 -c rapidsai/label/cuda10.0 -c numba -c conda-forge -c defaults cudf
Note: This conda installation only applies to Linux and Python versions 3.6/3.7.
It is easy to install cuDF using pip. You must specify the CUDA version to ensure you install the right package.
# CUDA 9.2
pip install cudf-cuda92
# CUDA 10.0.
pip install cudf-cuda100
The following instructions are for developers and contributors to cuDF OSS development. These instructions are tested on Linux Ubuntu 16.04 & 18.04. Use these instructions to build cuDF from source and contribute to its development. Other operatings systems may be compatible, but are not currently tested.
Compiler requirements:
gcc
version 5.4+nvcc
version 9.2+cmake
version 3.12.4+
CUDA/GPU requirements:
- CUDA 9.2+
- NVIDIA driver 396.44+
- Pascal architecture or better
You can obtain CUDA from https://developer.nvidia.com/cuda-downloads
Since cmake
will download and build Apache Arrow you may need to install Boost C++ (version 1.58+) before running
cmake
:
# Install Boost C++ for Ubuntu 16.04/18.04
$ sudo apt-get install libboost-all-dev
or
# Install Boost C++ for Conda
$ conda install -c conda-forge boost
To install cuDF from source, ensure the dependencies are met and follow the steps below:
- Clone the repository and submodules
CUDF_HOME=$(pwd)/cudf
git clone https://github.com/rapidsai/cudf.git $CUDF_HOME
cd CUDF_HOME
git submodule update --init --remote --recursive
- Create the conda development environment
cudf_dev
# create the conda environment (assuming in base `cudf` directory)
conda env create --name cudf_dev --file conda/environments/cudf_dev.yml
# activate the environment
source activate cudf_dev
- Build and install
libcudf
. CMake depends on thenvcc
executable being on your path or defined in$CUDACXX
.
$ cd $CUDF_HOME/cpp # navigate to C/C++ CUDA source root directory
$ mkdir build # make a build directory
$ cd build # enter the build directory
# CMake options:
# -DCMAKE_INSTALL_PREFIX set to the install path for your libraries or $CONDA_PREFIX if you're using Anaconda, i.e. -DCMAKE_INSTALL_PREFIX=/install/path or -DCMAKE_INSTALL_PREFIX=$CONDA_PREFIX
# -DCMAKE_CXX11_ABI set to ON or OFF depending on the ABI version you want, defaults to OFF. When turned ON, ABI compability for C++11 is used. When OFF, pre-C++11 ABI compability is used.
$ cmake .. -DCMAKE_INSTALL_PREFIX=$CONDA_PREFIX -DCMAKE_CXX11_ABI=OFF # configure cmake ...
$ make -j # compile the libraries librmm.so, libcudf.so ... '-j' will start a parallel job using the number of physical cores available on your system
$ make install # install the libraries librmm.so, libcudf.so to the CMAKE_INSTALL_PREFIX
- To run tests (Optional):
$ make test
- Build, install, and test cffi bindings:
$ make python_cffi # build CFFI bindings for librmm.so, libcudf.so
$ make install_python # build & install CFFI python bindings. Depends on cffi package from PyPi or Conda
$ cd python && py.test -v # optional, run python tests on low-level python bindings
- Build the
cudf
python package, in thepython
folder:
$ cd $CUDF_HOME/python
$ python setup.py build_ext --inplace
- You will also need the following environment variables, including
$CUDA_HOME
.
NUMBAPRO_NVVM=$CUDA_HOME/nvvm/lib64/libnvvm.so
NUMBAPRO_LIBDEVICE=$CUDA_HOME/nvvm/libdevice
- To run Python tests (Optional):
$ py.test -v # run python tests on cudf python bindings
- Finally, install the Python package to your Python path:
$ python setup.py install # install cudf python bindings
Done! You are ready to develop for the cuDF OSS project.
Follow the above instructions to build from source and add -DCMAKE_BUILD_TYPE=Debug
to the cmake
step.
For example:
$ cmake .. -DCMAKE_INSTALL_PREFIX=/install/path -DCMAKE_BUILD_TYPE=Debug # configure cmake ... use -DCMAKE_INSTALL_PREFIX=$CONDA_PREFIX if you're using Anaconda
This builds libcudf
in Debug mode which enables some assert
safety checks and includes symbols in the library for debugging.
All other steps for installing libcudf
into your environment are the same.
When you have a debug build of libcudf
installed, debugging with the cuda-gdb
and cuda-memcheck
is easy.
If you are debugging a Python script, simply run the following:
cuda-gdb -ex r --args python <program_name>.py <program_arguments>
cuda-memcheck python <program_name>.py <program_arguments>
A Dockerfile is provided with a preconfigured conda environment for building and installing cuDF from source based off of the master branch.
- Install nvidia-docker2 for Docker + GPU support
- Verify NVIDIA driver is
396.44
or higher - Ensure CUDA 9.2+ is installed
From cudf project root run the following, to build with defaults:
$ docker build --tag cudf .
After the container is built run the container:
$ docker run --runtime=nvidia -it cudf bash
Activate the conda environment cudf
to use the newly built cuDF and libcudf libraries:
root@3f689ba9c842:/# source activate cudf
(cudf) root@3f689ba9c842:/# python -c "import cudf"
(cudf) root@3f689ba9c842:/#
Several build arguments are available to customize the build process of the container. These are specified by using the Docker build-arg flag. Below is a list of the available arguments and their purpose:
Build Argument | Default Value | Other Value(s) | Purpose |
---|---|---|---|
CUDA_VERSION |
9.2 | 10.0 | set CUDA version |
LINUX_VERSION |
ubuntu16.04 | ubuntu18.04 | set Ubuntu version |
CC & CXX |
5 | 7 | set gcc/g++ version; NOTE: gcc7 requires Ubuntu 18.04 |
CUDF_REPO |
This repo | Forks of cuDF | set git URL to use for git clone |
CUDF_BRANCH |
master | Any branch name | set git branch to checkout of CUDF_REPO |
NUMBA_VERSION |
newest | >=0.40.0 | set numba version |
NUMPY_VERSION |
newest | >=1.14.3 | set numpy version |
PANDAS_VERSION |
newest | >=0.23.4 | set pandas version |
PYARROW_VERSION |
0.12.0 | Not supported | set pyarrow version |
CMAKE_VERSION |
newest | >=3.12 | set cmake version |
CYTHON_VERSION |
0.29 | Not supported | set Cython version |
PYTHON_VERSION |
3.6 | 3.7 | set python version |
The RAPIDS suite of open source software libraries aim to enable execution of end-to-end data science and analytics pipelines entirely on GPUs. It relies on NVIDIA® CUDA® primitives for low-level compute optimization, but exposing that GPU parallelism and high-bandwidth memory speed through user-friendly Python interfaces.
The GPU version of Apache Arrow is a common API that enables efficient interchange of tabular data between processes running on the GPU. End-to-end computation on the GPU avoids unnecessary copying and converting of data off the GPU, reducing compute time and cost for high-performance analytics common in artificial intelligence workloads. As the name implies, cuDF uses the Apache Arrow columnar data format on the GPU. Currently, a subset of the features in Apache Arrow are supported.