VISTA is a collection of databases, tools, and servers that permit extensive comparative genomics analyses.
Background
The VISTA family of tools is developed and hosted at Genomics Division of Lawrence Berkeley National Laboratory. This collaborative effort is supported by the Programs for Genomic Applications grant from the NHLBI/NIH and the Office of Biological and Environmental Research, Office of Science, US Department of Energy.
It was developed from modules supplied by developers at UC Berkeley, Stanford, and UC Davis, and based partly on the AVID Global Alignment program.
Usage
There are multiple VISTA servers, each allowing different types of searches.
mVISTA can be used to align and compare your sequences to those of multiple other species
rVISTA (regulatory VISTA) combines transcription factor binding sites database search with a comparative sequence analysis,the discovery of possible regulatory transcription factor binding sites in regions of their genes of interest. It can be used directly or through mVISTA, Genome VISTA, or VISTA Browser. A database of tissue-specific human enhancers is available through VISTA Enhancer Browser.
Comparative genomics is a field of biological research in which the genomic features of different organisms are compared. The genomic features may include the DNA sequence, genes, gene order, regulatory sequences, and other genomic structural landmarks. In this branch of genomics, whole or large parts of genomes resulting from genome projects are compared to study basic biological similarities and differences as well as evolutionary relationships between organisms. The major principle of comparative genomics is that common features of two organisms will often be encoded within the DNA that is evolutionarily conserved between them. Therefore, comparative genomic approaches start with making some form of alignment of genome sequences and looking for orthologous sequences (sequences that share a common ancestry) in the aligned genomes and checking to what extent those sequences are conserved. Based on these, genome and molecular evolution are inferred and this may in turn be put in the context of, for example, phenotypic evolution or population genetics.
Windows Vista, the line of Microsoft Windows client operating systems released in 2006 and 2007
VistA, (Veterans Health Information Systems and Technology Architecture) a medical records system of the United States Department of Veterans Affairs and others worldwide
Cimpress (previously Vistaprint) is a company that produces marketing materials and promotional items through mass customization and web-to-print systems. Founded in 1995 as Vistaprint, the company eventually acquired a number of other customization and printing companies in various countries. It adopted its current name, Cimpress, in 2014 when the company reorganized with the intention of unifying their systems across their subsidiary brands; Vistaprint remained the Cimpress brand in North America.
In 2007 the company was listed in the annual Graphic Arts Monthly 101 listing, as the 40th largest (by revenue) and the 4th fastest growing printing company in North America.
"Vista" is the debut single by South Korean girl group, Fiestar. The single was released on August 31, 2012 by LOEN Entertainment.
History
LOEN Entertainment confirmed that they will be releasing a six-member girl group coming from various countries. It is confirmed later when they released teasers of Yezi and Cheska's raps, along with the dance cover of SHINee's Lucifer by the group.
Before the group's debut, they released a collaborative song with IU entitled "Sea of Moonlight". The song charted high on charts, making number 1 at Bugs, Soribada, and Naver; Number 2 at Mnet and Olleh; and number 5 at Melon. They confirmed that the group's name will be Fiestar, a combination of Fiesta + Star. They released the music video on July 26, 2012.
One week before their debut, Fiestar collaborates with Tiger JK to release "Wicked", a song influenced by electronic house music and reggaeton combined. The song also charted at number 57 at Gaon and number 71 at Billboard, showing their popularity before their debut. The song is released digitally on August 23, 2012.
VISTA family of computational tools for comparative genomics | Inna Dubchak | Biata`20
VISTA family of computational tools for comparative genomics | Автор: Inna Dubchak | Организатор: Конференция Biata 2020
Смотрите это видео на Лекториуме: https://www.lektorium.tv/node/37236
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published: 23 Jul 2020
Introduction to Comparative Genomics
Comparative genomics is explained. For undergraduate students level.
Homology, alignment, Genomic T.
published: 17 Apr 2021
Comparative Genomics: The new cool tool in Scientific Research by Carly Boyd
Carly develops her research at the laboratory of Dr. Bob Zeller at San Diego State University.
If you want to know more about their research, visit their webpage http://www.bio.sdsu.edu/faculty/zeller/index.html
Stuck in a Bioinformatics problem? Need to learn Bioinformatics for university project/class? To get Bioinformatics consultancy: [email protected]
Learning Bioinformatics is not difficult at all, especially through learn-at-your-pace BioCode Bioinformatics courses, you can get started even if you are not familiar with computers, programming, or computing skills. BioCode courses will take you from the very beginner’s level to the advanced levels.
Our most sold and 5-star courses:
❤️❤️❤️ Advanced Bioinformatician Course: https://bit.ly/38HwFnV
❤️❤️Fundamental Bioinformatician Course: https://bit.ly/3DQRqvv
❤️Biological programming in Python & R, BioConductor, BioPython: https://bit.ly/3zNzobh
R for Bioinformatics: https://bit.ly/3l20x47
Python for Bioinformatics: https://bit.ly/3...
Comparison of whole genomes from different organisms is comparative genomics, which includes a comparison of gene number, gene location, and gene content from
these genomes.
published: 16 May 2020
Comparative Genomics
Table of Contents:
00:00 - Comparative Genomics
00:03 - Genome Sizes
01:42 - Shared Protein Domains
02:54 - Microbial Genome Resources
03:40 - Is Current Y.pestis descended from the Black Death?
05:10 - Other important Genomes
07:42 - Comparison of Human and Mouse Chromosomes (Synteny).
09:36 - Chimpanzee Genome
10:27 - Chimpanzee Genome I
11:16 - Chimpanzee Genome II
11:43 - Chimpanzee Genome III
11:47 - Platypus Genome
12:30 - Giant Panda Genome
13:15 - Southern African Genomes
14:06 - Personal Genomes
published: 03 Mar 2021
Introduction to the Ensembl Genome Browser - Webinar Series (2020): Webinar 4 - Comparative Genomics
This is the recording of a live webinar on comparative genomics data and views in Ensembl. It was presented by Astrid Gall on 30 April 2020.
published: 01 May 2020
Genome annotation
This lecture explains about what is genome annotation and what is the importance of gene annotation. Many organisms have had their entire genome sequenced, however this is not the end of a genome project. Annotation is the process by which pertinent information about these raw DNA sequences is added to the genome databases. This involves describing different regions of the code and identifying which regions can be called genes.
The diagram below represents a tiny fragment of DNA, a single hypothetical gene. Notice that there are various parts within the gene. Some of these parts will code for a protein, others contain regulatory information, some will not be translated and their function is still unclear.One important aspect of annotation is identifying which parts of a genome are transcr...
VISTA family of computational tools for comparative genomics | Автор: Inna Dubchak | Организатор: Конференция Biata 2020
Смотрите это видео на Лекториуме: http...
VISTA family of computational tools for comparative genomics | Автор: Inna Dubchak | Организатор: Конференция Biata 2020
Смотрите это видео на Лекториуме: https://www.lektorium.tv/node/37236
Смотрите другие видео курса «Конференция Biata 2020: Talks» на Лекториуме: https://www.lektorium.tv/node/37186
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VISTA family of computational tools for comparative genomics | Автор: Inna Dubchak | Организатор: Конференция Biata 2020
Смотрите это видео на Лекториуме: https://www.lektorium.tv/node/37236
Смотрите другие видео курса «Конференция Biata 2020: Talks» на Лекториуме: https://www.lektorium.tv/node/37186
Подписывайтесь на канал: https://www.lektorium.tv/ZJA
Следите за новостями: https://vk.com/openlektorium
https://www.facebook.com/openlektorium
Carly develops her research at the laboratory of Dr. Bob Zeller at San Diego State University.
If you want to know more about their research, visit their webpa...
Carly develops her research at the laboratory of Dr. Bob Zeller at San Diego State University.
If you want to know more about their research, visit their webpage http://www.bio.sdsu.edu/faculty/zeller/index.html
Carly develops her research at the laboratory of Dr. Bob Zeller at San Diego State University.
If you want to know more about their research, visit their webpage http://www.bio.sdsu.edu/faculty/zeller/index.html
Stuck in a Bioinformatics problem? Need to learn Bioinformatics for university project/class? To get Bioinformatics consultancy: [email protected]
Learnin...
Stuck in a Bioinformatics problem? Need to learn Bioinformatics for university project/class? To get Bioinformatics consultancy: [email protected]
Learning Bioinformatics is not difficult at all, especially through learn-at-your-pace BioCode Bioinformatics courses, you can get started even if you are not familiar with computers, programming, or computing skills. BioCode courses will take you from the very beginner’s level to the advanced levels.
Our most sold and 5-star courses:
❤️❤️❤️ Advanced Bioinformatician Course: https://bit.ly/38HwFnV
❤️❤️Fundamental Bioinformatician Course: https://bit.ly/3DQRqvv
❤️Biological programming in Python & R, BioConductor, BioPython: https://bit.ly/3zNzobh
R for Bioinformatics: https://bit.ly/3l20x47
Python for Bioinformatics: https://bit.ly/3tjGn9s
❤️Bioinformatics Scripting on Linux Terminal (Ubuntu): https://bit.ly/2X2NsiO
❤️Bioinformatics tools, servers, pipelines: https://bit.ly/3E1mbya
❤️Biological Databases: https://bit.ly/3E1mbya
❤️2D & 3D Structure Prediction: https://bit.ly/3th5oSL
❤️Computational Medicine Design (In-depth): https://bit.ly/3th5oSL
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❤️Computational Vaccinology: https://bit.ly/38LPma6
❤️Molecular Docking: https://bit.ly/3th5oSL
❤️RNA-Seq Data Analysis with Linux/R (BWA, BowTie2, HISAT2, StringTie2, TopHat2): https://bit.ly/2WYesQG
❤️NGS Data Analysis: https://bit.ly/3yNkEb5
❤️Biological Data Analysis: https://bit.ly/2X2NsiO
❤️Computational Biology (Basics to Advanced level course): https://bit.ly/3kWICeX
❤️Biological Data Visualization with ggplot2: https://bit.ly/3BMua04
❤️Molecular Dynamics and Simulation: https://bit.ly/2YwNHmT
❤️BioPython: https://bit.ly/3n7z83a
❤️❤️Functional Bioinformatics Internship Course (Project-based): https://bit.ly/3yLNxVa
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If you are interested in subscription-based courses: Get access to BioCode prerecorded courses, starting at just 17.99$/month https://www.biocode.ltd
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Molecular Evolution: https://bit.ly/3zP2AyF
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How Will this Course Benefit You?
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BioCode courses are pre-recorded and online, that means you can learn at your own pace and watch the lectures as many times as you want and complete the course whenever you have the time!
Is It An In-Depth Theoretical and Practical Course?
Yes, everything is covered in-depth, each lecture topic duration ranges from 20-50 minutes, therefore, we have covered everything that is required for you to do end-to-end Bioinformatics analysis.
Stuck in a Bioinformatics problem? Need to learn Bioinformatics for university project/class? To get Bioinformatics consultancy: [email protected]
Learning Bioinformatics is not difficult at all, especially through learn-at-your-pace BioCode Bioinformatics courses, you can get started even if you are not familiar with computers, programming, or computing skills. BioCode courses will take you from the very beginner’s level to the advanced levels.
Our most sold and 5-star courses:
❤️❤️❤️ Advanced Bioinformatician Course: https://bit.ly/38HwFnV
❤️❤️Fundamental Bioinformatician Course: https://bit.ly/3DQRqvv
❤️Biological programming in Python & R, BioConductor, BioPython: https://bit.ly/3zNzobh
R for Bioinformatics: https://bit.ly/3l20x47
Python for Bioinformatics: https://bit.ly/3tjGn9s
❤️Bioinformatics Scripting on Linux Terminal (Ubuntu): https://bit.ly/2X2NsiO
❤️Bioinformatics tools, servers, pipelines: https://bit.ly/3E1mbya
❤️Biological Databases: https://bit.ly/3E1mbya
❤️2D & 3D Structure Prediction: https://bit.ly/3th5oSL
❤️Computational Medicine Design (In-depth): https://bit.ly/3th5oSL
❤️Computational Medicine Design: https://bit.ly/3n8j0yn
❤️Computational Vaccinology: https://bit.ly/38LPma6
❤️Molecular Docking: https://bit.ly/3th5oSL
❤️RNA-Seq Data Analysis with Linux/R (BWA, BowTie2, HISAT2, StringTie2, TopHat2): https://bit.ly/2WYesQG
❤️NGS Data Analysis: https://bit.ly/3yNkEb5
❤️Biological Data Analysis: https://bit.ly/2X2NsiO
❤️Computational Biology (Basics to Advanced level course): https://bit.ly/3kWICeX
❤️Biological Data Visualization with ggplot2: https://bit.ly/3BMua04
❤️Molecular Dynamics and Simulation: https://bit.ly/2YwNHmT
❤️BioPython: https://bit.ly/3n7z83a
❤️❤️Functional Bioinformatics Internship Course (Project-based): https://bit.ly/3yLNxVa
Essential Bioinformatics: https://bit.ly/3h3UX00
Freelance MasterClass: https://bit.ly/3zNPeTa
You’ll get access to:
✔️Certificate
✔️ Video tutorials (step-by-step, hands-on)
✔️MCQs, Exercises, Projects
✔️PDF Notes, Transcriptions and Presentations
✔️Netflix-style Resuming
If you are interested in subscription-based courses: Get access to BioCode prerecorded courses, starting at just 17.99$/month https://www.biocode.ltd
For Molecular Biology, Microbiology, Cellular Biology and Biotechnology Courses
===================================================================
Cellular Biology: https://bit.ly/3DLjOPT
Molecular Biology: https://bit.ly/3h8Qgln
Genetics: https://bit.ly/3yOPAI2
Molecular Genetics: https://bit.ly/3DV6CYS
Biochemistry: https://bit.ly/3tr4Ae8
Cancer: https://bit.ly/38GlBYa
Microbiology: https://bit.ly/3tjvJ2j
Molecular Pathology: https://bit.ly/3h58ILI
Virology: https://bit.ly/3BCR9dU
Mycology: https://bit.ly/3tn4aFp
Biotechnology: https://bit.ly/3l4tBrQ
Biotechnology Laboratory Techniques: https://bit.ly/3h92w5r
Bioinformatics for Biotechnologists: https://bit.ly/3h7V6iL
Cell and Tissue Culture: https://bit.ly/3DS8jG7
Microbial Biotechnology: https://bit.ly/3n1QLBE
Recombinant DNA Technology: https://bit.ly/3h287un
Health Biotechnology: https://bit.ly/2WTl2bg
Nanobiotechnology: https://bit.ly/2WTpw1c
Animal Biotechnology: https://bit.ly/3l1Fsqe
Agriculture Biotechnology: https://bit.ly/3tj0cxv
Cell Signaling: https://bit.ly/38GuPnj
Industrial Biotechnology: https://bit.ly/3kXPjNX
Environmental Biotechnology: https://bit.ly/3DTjOgA
Plant Biotechnology: https://bit.ly/2Yr6cZL
Enzymology: https://bit.ly/2YxHw1S
Aquaculture Technology: https://bit.ly/3th1Kbi
Molecular Evolution: https://bit.ly/3zP2AyF
Biostatistics: https://bit.ly/3zP2AyF
Machine Learning for Bioinformatics: https://bit.ly/38Hvyoj
Immunology: https://bit.ly/3zSrWMa
We are all over the social media, where we post useful knowledge for all Biologists! Do follow us!
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BioCode's Blog: https://www.biocode.ltd/blog
Telegram Group: http://t.me/biocodeltd
How Will this Course Benefit You?
-No prior Bioinformatics or programming knowledge required.
-You will first go through the basics of Bioinformatics before advance topics are taught.
-You will have a greater understanding of Bioinformatics data analysis.
How Will You Learn?
BioCode courses are pre-recorded and online, that means you can learn at your own pace and watch the lectures as many times as you want and complete the course whenever you have the time!
Is It An In-Depth Theoretical and Practical Course?
Yes, everything is covered in-depth, each lecture topic duration ranges from 20-50 minutes, therefore, we have covered everything that is required for you to do end-to-end Bioinformatics analysis.
Comparison of whole genomes from different organisms is comparative genomics, which includes a comparison of gene number, gene location, and gene content from
t...
Comparison of whole genomes from different organisms is comparative genomics, which includes a comparison of gene number, gene location, and gene content from
these genomes.
Comparison of whole genomes from different organisms is comparative genomics, which includes a comparison of gene number, gene location, and gene content from
these genomes.
Table of Contents:
00:00 - Comparative Genomics
00:03 - Genome Sizes
01:42 - Shared Protein Domains
02:54 - Microbial Genome Resources
03:40 - Is Curren...
Table of Contents:
00:00 - Comparative Genomics
00:03 - Genome Sizes
01:42 - Shared Protein Domains
02:54 - Microbial Genome Resources
03:40 - Is Current Y.pestis descended from the Black Death?
05:10 - Other important Genomes
07:42 - Comparison of Human and Mouse Chromosomes (Synteny).
09:36 - Chimpanzee Genome
10:27 - Chimpanzee Genome I
11:16 - Chimpanzee Genome II
11:43 - Chimpanzee Genome III
11:47 - Platypus Genome
12:30 - Giant Panda Genome
13:15 - Southern African Genomes
14:06 - Personal Genomes
Table of Contents:
00:00 - Comparative Genomics
00:03 - Genome Sizes
01:42 - Shared Protein Domains
02:54 - Microbial Genome Resources
03:40 - Is Current Y.pestis descended from the Black Death?
05:10 - Other important Genomes
07:42 - Comparison of Human and Mouse Chromosomes (Synteny).
09:36 - Chimpanzee Genome
10:27 - Chimpanzee Genome I
11:16 - Chimpanzee Genome II
11:43 - Chimpanzee Genome III
11:47 - Platypus Genome
12:30 - Giant Panda Genome
13:15 - Southern African Genomes
14:06 - Personal Genomes
This lecture explains about what is genome annotation and what is the importance of gene annotation. Many organisms have had their entire genome sequenced, howe...
This lecture explains about what is genome annotation and what is the importance of gene annotation. Many organisms have had their entire genome sequenced, however this is not the end of a genome project. Annotation is the process by which pertinent information about these raw DNA sequences is added to the genome databases. This involves describing different regions of the code and identifying which regions can be called genes.
The diagram below represents a tiny fragment of DNA, a single hypothetical gene. Notice that there are various parts within the gene. Some of these parts will code for a protein, others contain regulatory information, some will not be translated and their function is still unclear.One important aspect of annotation is identifying which parts of a genome are transcribed into mRNA. Obviously computer programs are essential to this process, however, human brains are often required to evaluate computer-generated gene models.
For more information, log on to-
http://www.shomusbiology.com/
Get Shomu's Biology DVD set here-
http://www.shomusbiology.com/dvd-store/
Download the study materials here-
http://shomusbiology.com/bio-materials.html
Remember Shomu’s Biology is created to spread the knowledge of life science and biology by sharing all this free biology lectures video and animation presented by Suman Bhattacharjee in YouTube. All these tutorials are brought to you for free. Please subscribe to our channel so that we can grow together. You can check for any of the following services from Shomu’s Biology-
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Thank you for watching
This lecture explains about what is genome annotation and what is the importance of gene annotation. Many organisms have had their entire genome sequenced, however this is not the end of a genome project. Annotation is the process by which pertinent information about these raw DNA sequences is added to the genome databases. This involves describing different regions of the code and identifying which regions can be called genes.
The diagram below represents a tiny fragment of DNA, a single hypothetical gene. Notice that there are various parts within the gene. Some of these parts will code for a protein, others contain regulatory information, some will not be translated and their function is still unclear.One important aspect of annotation is identifying which parts of a genome are transcribed into mRNA. Obviously computer programs are essential to this process, however, human brains are often required to evaluate computer-generated gene models.
For more information, log on to-
http://www.shomusbiology.com/
Get Shomu's Biology DVD set here-
http://www.shomusbiology.com/dvd-store/
Download the study materials here-
http://shomusbiology.com/bio-materials.html
Remember Shomu’s Biology is created to spread the knowledge of life science and biology by sharing all this free biology lectures video and animation presented by Suman Bhattacharjee in YouTube. All these tutorials are brought to you for free. Please subscribe to our channel so that we can grow together. You can check for any of the following services from Shomu’s Biology-
Buy Shomu’s Biology lecture DVD set- www.shomusbiology.com/dvd-store
Shomu’s Biology assignment services – www.shomusbiology.com/assignment -help
Join Online coaching for CSIR NET exam – www.shomusbiology.com/net-coaching
We are social. Find us on different sites here-
Our Website – www.shomusbiology.com
Facebook page- https://www.facebook.com/ShomusBiology/
Twitter - https://twitter.com/shomusbiology
SlideShare- www.slideshare.net/shomusbiology
Google plus- https://plus.google.com/113648584982732129198
LinkedIn - https://www.linkedin.com/in/suman-bhattacharjee-2a051661
Youtube- https://www.youtube.com/user/TheFunsuman
Thank you for watching
VISTA family of computational tools for comparative genomics | Автор: Inna Dubchak | Организатор: Конференция Biata 2020
Смотрите это видео на Лекториуме: https://www.lektorium.tv/node/37236
Смотрите другие видео курса «Конференция Biata 2020: Talks» на Лекториуме: https://www.lektorium.tv/node/37186
Подписывайтесь на канал: https://www.lektorium.tv/ZJA
Следите за новостями: https://vk.com/openlektorium
https://www.facebook.com/openlektorium
Carly develops her research at the laboratory of Dr. Bob Zeller at San Diego State University.
If you want to know more about their research, visit their webpage http://www.bio.sdsu.edu/faculty/zeller/index.html
Stuck in a Bioinformatics problem? Need to learn Bioinformatics for university project/class? To get Bioinformatics consultancy: [email protected]
Learning Bioinformatics is not difficult at all, especially through learn-at-your-pace BioCode Bioinformatics courses, you can get started even if you are not familiar with computers, programming, or computing skills. BioCode courses will take you from the very beginner’s level to the advanced levels.
Our most sold and 5-star courses:
❤️❤️❤️ Advanced Bioinformatician Course: https://bit.ly/38HwFnV
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Comparison of whole genomes from different organisms is comparative genomics, which includes a comparison of gene number, gene location, and gene content from
these genomes.
Table of Contents:
00:00 - Comparative Genomics
00:03 - Genome Sizes
01:42 - Shared Protein Domains
02:54 - Microbial Genome Resources
03:40 - Is Current Y.pestis descended from the Black Death?
05:10 - Other important Genomes
07:42 - Comparison of Human and Mouse Chromosomes (Synteny).
09:36 - Chimpanzee Genome
10:27 - Chimpanzee Genome I
11:16 - Chimpanzee Genome II
11:43 - Chimpanzee Genome III
11:47 - Platypus Genome
12:30 - Giant Panda Genome
13:15 - Southern African Genomes
14:06 - Personal Genomes
This lecture explains about what is genome annotation and what is the importance of gene annotation. Many organisms have had their entire genome sequenced, however this is not the end of a genome project. Annotation is the process by which pertinent information about these raw DNA sequences is added to the genome databases. This involves describing different regions of the code and identifying which regions can be called genes.
The diagram below represents a tiny fragment of DNA, a single hypothetical gene. Notice that there are various parts within the gene. Some of these parts will code for a protein, others contain regulatory information, some will not be translated and their function is still unclear.One important aspect of annotation is identifying which parts of a genome are transcribed into mRNA. Obviously computer programs are essential to this process, however, human brains are often required to evaluate computer-generated gene models.
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VISTA is a collection of databases, tools, and servers that permit extensive comparative genomics analyses.
Background
The VISTA family of tools is developed and hosted at Genomics Division of Lawrence Berkeley National Laboratory. This collaborative effort is supported by the Programs for Genomic Applications grant from the NHLBI/NIH and the Office of Biological and Environmental Research, Office of Science, US Department of Energy.
It was developed from modules supplied by developers at UC Berkeley, Stanford, and UC Davis, and based partly on the AVID Global Alignment program.
Usage
There are multiple VISTA servers, each allowing different types of searches.
mVISTA can be used to align and compare your sequences to those of multiple other species
rVISTA (regulatory VISTA) combines transcription factor binding sites database search with a comparative sequence analysis,the discovery of possible regulatory transcription factor binding sites in regions of their genes of interest. It can be used directly or through mVISTA, Genome VISTA, or VISTA Browser. A database of tissue-specific human enhancers is available through VISTA Enhancer Browser.