Trichinella nelsoni

Genome Assembly & Annotation

Assembly

The genome of T. nelsoni was produced by the Gasser laboratory at the University of Melbourne, as part of the assembly and analysis of all 12 recognized Trichinella species (described in Korhonen et al (2016)).

Annotation

The gene predictions were made by the Gasser laboratory at the University of Melbourne.

Downloads

• Genomic Sequence (FASTA)
• Hard-masked Genomic Sequence (FASTA)
• Soft-masked Genomic Sequence (FASTA)
• Annotations (GFF3)
• Proteins (FASTA)
• Full-length transcripts (FASTA)
• CDS transcripts (FASTA)

Tools

• Search for sequences in the genome and proteome using BLAST
• Work with lists of data using the WormBase ParaSite BioMart data-mining tool
• Programatically access WormBase ParaSite data using the REST API
• Predict the effects of variants using the Variant Effect Predictor

Key Publications

• Korhonen PK, Pozio E, La Rosa G, Chang BC, Koehler AV, Hoberg EP, Boag PR, Tan P, Jex AR, Hofmann A, Sternberg PW, Young ND, Gasser RB. Phylogenomic and biogeographic reconstruction of the Trichinella complex. Nat Commun, 2016;7():10513

Navigation

Genome Browser (JBrowse)

Genome Browser (Ensembl)

Example gene page

Example gene tree

Gene Expression