A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/

InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.

MOGONET (Multi-Omics Graph cOnvolutional NETworks) is a novel multi-omics data integrative analysis framework for classification tasks in biomedical applications.

Universal Scene Description

List of software packages for multi-omics analysis

TBSS (FSL) implementation with ANTs and T1w registration to template

Simulations for the cosinor model

Python implementations for Sparse CCA

sparse Canonical Correlation Analysis

Toolbox for normative modelling and spatial inference of neuroimaging data. https://pcntoolkit.readthedocs.io/en/latest/

Unsupervised Learning for Image Registration

scikit-learn compatible implementation of stability selection.

multi atlas transfer tools for neuroimaging (maTT)

A Python implementation of Partial Least Squares (PLS) decomposition

Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software package.

Pre-prints for some of my accepted papers

Sequential model-based optimization with a `scipy.optimize` interface

A Python toolbox for performing gradient-free optimization

A neuroscience library for Python, intended to complement the existing nibabel library.

The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets

Python package to access a cacophony of neuro-imaging file formats

A Python library for moderation, mediation and conditional process analysis.

Command-line program to download videos from YouTube.com and other video sites

Fast regression and mediation analysis of vertex or voxel MRI data with TFCE

Python interface to MINC , using cython and EZminc library

Advanced Normalization Tools (ANTs)