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Commits on Apr 12, 2018

• Merge pull request #1 from splatlab/master

  Show description for bca61de
  ttriche

  authored
  bca61de

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• Merge branch 'develop'

  prashantpandey

  committed
  926388f

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• Removing sdsl dependencies.

  prashantpandey

  committed
  c75a68a

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• Merge branch 'develop'

  prashantpandey

  committed
  6a97f18

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• Adding a new new transcript file.

  prashantpandey

  committed
  c080c7e

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• Merge branch 'master' into develop

  prashantpandey

  committed
  7a054dc

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Commits on Mar 24, 2018

• Fixing merge conflict.

  prashantpandey

  committed
  7d3b111

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• Merge branch 'FixedPrefetch'

  prashantpandey

  committed
  82c8623

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• 1. Fixing query code to use the k-mer size from the input Mantis file. 2. Resize the last bit vector buffer before flushing to disk.

  prashantpandey

  committed
  643e7d4

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Commits on Mar 22, 2018

• Fixing a typo in query command.

  prashantpandey

  authored
  2eeb291

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• Merge branch 'FixedPrefetch'

  prashantpandey

  committed
  34f1f2d

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• pulling input cqf list from master.

  prashantpandey

  committed
  ad48adf

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• Adding a small fix to string fuctions.

  prashantpandey

  committed
  a8808b4

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Commits on Jan 21, 2018

• Recommenting the test code.

  prashantpandey

  committed
  70d16ca

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Commits on Jan 20, 2018

• Fixing a small bug in the multiple bit vectors scheme and some configuration changes.

  prashantpandey

  committed
  3be1a52

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Commits on Jan 19, 2018

• Some minor changes to remove warnings.

  prashantpandey

  committed
  27bad76

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• Fixing a bug in the new chunked bit vector scheme and also adding a handler function for prefetching.

  prashantpandey

  committed
  1566850

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• Adding madvise back.

  prashantpandey

  committed
  d637f76

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Commits on Jan 18, 2018

• Bringing aio_read back.

  prashantpandey

  committed
  ce5c9fb

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• minor

  prashantpandey

  committed
  02082a2

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• Commenting out aio_read.

  prashantpandey

  committed
  2219db4

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• Adding fadvise.

  prashantpandey

  committed
  8781fb6

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• Fixing a small bug.

  prashantpandey

  committed
  fdcf927

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• Adding changes from last successful run on newton.

  prashantpandey

  committed
  62b2473

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Commits on Jan 17, 2018

• Fixing a bug in the query code.

  prashantpandey

  committed
  c3037d3

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• Cherry picked code from newhashing branch.

  prashantpandey

  committed
  5d5302b

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• Prefetching configurations.

  prashantpandey

  committed
  509ce2a

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Commits on Jan 16, 2018

• Changed some more configurations.

  prashantpandey

  committed
  3967779

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• Updating the logic to update the last_prefetch_offset.

  prashantpandey

  committed
  4d23a81

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• Fixed the code to calculate the buffer size for each CQF.

  prashantpandey

  committed
  b1d6227

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• minor bug fix.

  prashantpandey

  committed
  8f6c9cf

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• Adding init last_prefetch_offset to 0 and added another log message.

  prashantpandey

  committed
  6672c38

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• Changing max aio thread to 5500, aio_idle_time to 60, and max predetch buffer to 64MB.

  prashantpandey

  committed
  cc72ea1

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• Using mmap to allocate prefetch buffer. Changing number of predetch threads to 1024.

  prashantpandey

  committed
  1400f1c

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• Adding prefetch changes. 1. Fixing the qfi_next return val. 2. Fixing the initing last_prefetch_offset. 3. Passing key_bits as an argument to CQF.

  prashantpandey

  committed
  659223c

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