A collection of scripts and notes related to genomics and bioinformatics

Reference-guided transcript discovery and quantification for long read RNA-Seq data

An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.

DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing

Snakemake pipeline to analyze transposable element 'omics data.

The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, clusters reads and produces a consensus sequence for each cluster after multiple sequence alignment.

R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions

Nanopore RNASeq data

An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads

NanoASV official repo

VIral GEnome ASsembly pipelines for WGS

Bob Loblaw's Law Blog Applauds Porexplorer

Benchmark analysis of algorithms for determining full-length mRNA isoforms by Nanopore RNA-seq data.

(long read) fastq input to final report

Surveillance of wastewater for SARS-CoV-2 detection

a tool to identify species and inter-species hybrids and chromosome copy number variants from high-throughput sequencing data

R package for DNA methylation analysis on Direct Whole Methylome Sequencing (dWMS) data.