Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly

Long read / genome alignment software

a tool for simulating nanopore raw signal data

RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genomes) in real-time without basecalling. Described by Firtina et al. (published at https://academic.oup.com/bioinformatics/article/39/Supplement_1/i297/7210440).

Tool for demultiplexing Nanopore barcode sequence data

Fast sequencing data quality metrics

Implements a modified version of the CUSUM algorithm for robust detection of step-like changes time-series data

Automatically stop a MinION sequencing experiment after a specific amount of data has been collected.

R wrapper for slow5lib

A simple tool for viewing and reporting base modification frequencies from BAM files

A pipeline to detect co-infections from Nanopore reads.

Software for monitoring metagenomes using nanopore sequencing reads

A program using SMID vectors to extract fastq reads by read ids.

Extract read counts from cfDNA