Use of state of the art Convolutional neural network architectures including 3D UNet, 3D VNet and 2D UNets for Brain Tumor Segmentation and using segmented image features for Survival Prediction of patients through deep neural networks.

Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.

Code for deep learning-based glioma/tumor growth models

The purpose of this project is to be able to automatically and efficiently segment and classify high-grade and low-grade gliomas.

Learning joint Segmentation of Tissues And Brain Lesions (jSTABL) from task-specific hetero-modal domain-shifted datasets

We provide a method to extract the tractographic features from structural MR images for patients with brain tumor

APOLLO is an Accurate and independently validated Prediction mOdel of Lower-grade gLiomas Overall survival

IRIS-MRS-AI is a tool that classifies IDH and TERTp mutations in gliomas. Besides these capabilities, IRIS-MRS-AI is a tool that can create custom models using users' data.

Multimodal Context-Aware Detection of Glioma Biomarkers using MRI and WSI

IDH Classification for Gliomas using CNN and Transformers.

An implementation of Mask R-CNN algorithm to perform automatic object detection, localization, classification and instance segmentation of immunoreactive tumor cells on Ki-67 stained glioma images.

🤗 neukit: web application for automatic brain extraction and preoperative tumor segmentation from MRI

Quality estimation for BraTS glioma segmentation models

The official implementations of our BIBM'24 paper: Focus on Focus: Focus-oriented Representation Learning and Multi-view Cross-modal Alignment for Glioma Grading

CIS Research Program 2022; MIT Professor Manolis Kellis; Machine Learning and Deep Learing in Genomics and Health; U-Net CNN LGG Segmentation - concatenation hyperparameter tuning

Glioblastoma multiforme (GBM) biomarker knowledge base

This repo is for segmentation of T2 hyp regions in gliomas.

NiftyNet-based implementation of the Autofocus Layer for semantic segmentation.

NiftyNet-based implementation of Autofocus Net and Autofocus Layer.

In this project, we created a convolutional neural network using the EfficientNetB1 model in Keras to perform Image Classification of MRI brain scans with reasonably high (97.4%) accuracy.