Efficient simulations of turbulent atmospheric boundary layer.

# Clone
git clone --recursive [email protected]:exabl/snek5000.git

# Activate paths: Start here. Always!
cd snek5000
source activate.sh

# Build Nek5000
cd lib/Nek5000/tools/
./maketools all
cd -

This workflow requires you to setup a Python environment. There are two ways to do this (and it has to be done only once):

• Using venv

  python -m venv venv
  source venv/bin/activate
  pip install -e .

• Using conda

  conda env create -n snek5000 -f environment.yml
  conda activate snek5000
  pip install -e .

After setting up Python, you can do either of the following:

1. Run Snakemake in a bash (or similar) console:

   # Everything done via a Snakefile at once
   cd src/abl_nek5000/
   snakemake run
   cd -
   
   # ... or one by one
   cd src/abl_nek5000/
   snakemake mesh
   snakemake compile
   snakemake run
   snakemake archive
   snakemake clean
   cd -
   

2. Use the snek5000 Python API, based on fluidsim

   from snek5000.solvers.abl import Simul
   
   params = Simul.create_default_params()
   
   # modify parameters as needed
   
   sim = Simul(params)
   sim.make.exec()  # by default starts a run
   sim.make.exec(["mesh", "compile"])  # run rules in order
   sim.make.exec(["run"], dryrun=True)  # simulate

# Build case
cd src/abl/
CASE="abl"
echo "$CASE.box" | genbox
mv -f box.re2 abl.re2
echo "$CASE\n0.01" | genmap
FFLAGS="-mcmodel=medium -march=native" CFLAGS="-mcmodel=medium -march=native" makenek
cd -

# Run case
cd src/abl/
nekmpi $CASE <nb_procs> # foreground
nekbmpi $CASE <nb_procs> # background
cd -


# Clean
makenek clean

See contributing guidelines.