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activate.sh
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activate.sh
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DIR="$(pwd)"
export NEK_SOURCE_ROOT="$DIR/lib/Nek5000"
export PATH="$PATH:$NEK_SOURCE_ROOT/bin"
alias smake="snakemake -j all"
# tarball utilities
function tar-help() {
echo "tar-ls: List contents"
echo "tar-diff: Diff 2 archives"
echo "bsdtar xf: Extract archive"
echo "tar -xf --wildcards 'glob_pattern': Extract using a glob pattern"
}
function tar-ls() {
bsdtar tvf $@
# tar -tvf $@ --use-compress-program=zstdmt
}
function tar-diff() {
local argc=$#
if [ $argc -ne 2 ]; then
echo "Usage: tar-diff FILE1 FILE2"
return
fi
diff --color=auto <(tar-ls $1) <(tar-ls $2)
}
if [ -d venv ]; then
source venv/bin/activate
elif [[ -z "$CONDA_PREFIX" ]] && [[ -z "$VIRTUAL_ENV" ]]; then
echo 'WARNING: no venv / conda environment present.'
echo 'Read the docs on how to setup your Python environment: https://snek5000.readthedocs.io/en/latest/intro.html'
fi
if [ "$BASH_VERSION" ]; then
if [ $(type -P "snakemake") ]; then
eval $(snakemake --bash-completion)
fi
fi