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    22 repositories

    • vamb

      Public
      Variational autoencoder for metagenomic binning
      Python
      •
      MIT License
      •46•259•38•3•Updated Nov 11, 2024Nov 11, 2024

    • pimms

      Public
      Imputing proteomics data using deep learning models
      Python
      •
      GNU General Public License v3.0
      •2•18•1•1•Updated Nov 13, 2024Nov 13, 2024

    • python_package

      Public template
      Example Python package
      pythontemplate-project
      Python
      •
      MIT License
      •0•1•0•0•Updated Oct 31, 2024Oct 31, 2024

    • taxconverter

      Public
      Unifies the presentation of taxonomic classifiers output
      Python
      •
      MIT License
      •0•1•1•0•Updated Oct 22, 2024Oct 22, 2024

    • njab

      Public
      Not just another biomarkers: Functionality for biomarker discovery
      Python
      •
      MIT License
      •1•1•1•0•Updated Oct 16, 2024Oct 16, 2024

    • phamb

      Public
      Downstream processing of VAMB binning for Viral Elucidation
      Python
      •
      MIT License
      •8•46•13•1•Updated Jul 3, 2024Jul 3, 2024

    • git-tutorial

      Public
      VS Code on Binder
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •65•1•1•2•Updated Jun 18, 2024Jun 18, 2024

    • PSYCH-VAE

      Public
      Python
      •1•0•0•0•Updated May 27, 2024May 27, 2024

    • cr2_usage_bot

      Public
      Send cr2 usage on computerome to a Slack channel.
      Python
      •0•0•0•0•Updated May 3, 2024May 3, 2024

    • list_your_publications

      Public
      Query your list of publications using ORCID and DOI APIs
      Python
      •
      MIT License
      •1•0•0•0•Updated Apr 27, 2024Apr 27, 2024

    • EIR

      Public
      A toolkit for training deep learning models on genotype, tabular, sequence, image, array and binary data.
      Python
      •
      GNU Affero General Public License v3.0
      •5•1•0•0•Updated Jan 19, 2024Jan 19, 2024

    • vCentenarian

      Public
      Repository with supporting code and information for virome analysis of Centenarian metagenomes
      Python
      •3•3•1•0•Updated Sep 28, 2023Sep 28, 2023

    • HAPI

      Public
      Script to run HAPI (Haplotype-Aware Probabilistic model for Indels) to identify the CCR5delta32 deletion in ancient low coverage dna samples
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 14, 2023Aug 14, 2023

    • avamb

      Public archive
      Variational autoencoder for metagenomic binning
      Python
      •
      MIT License
      •46•1•0•1•Updated May 15, 2023May 15, 2023

    • vamb-aamb

      Public
      Variational and Adversarial autoencoders for metagenomic binning
      Python
      •
      MIT License
      •46•0•0•0•Updated Jan 10, 2023Jan 10, 2023

    • avamb-1

      Public
      Variational autoencoder for metagenomic binning
      Python
      •
      MIT License
      •46•0•0•0•Updated Dec 23, 2022Dec 23, 2022

    • PSYCH-Pred

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated May 17, 2022May 17, 2022

    • decision-making-vaes

      Public
      Decision based on models using the latent encoding (approx. posterior)
      Python
      •4•0•0•0•Updated May 11, 2022May 11, 2022

    • ONT_assembly

      Public
      Python
      •0•0•0•0•Updated Dec 16, 2020Dec 16, 2020

    • vamb_cami2

      Public
      Pipeline for running VAMB on CAMI2 datasets
      Python
      •0•0•0•0•Updated Oct 19, 2020Oct 19, 2020

    • proteomics-metadata-standard

      Public
      The Proteomics Experimental Design file format: Standard for experimental design annotation
      Python
      •
      GNU General Public License v2.0
      •108•0•0•0•Updated Oct 12, 2020Oct 12, 2020

    • StreptococcusMitis

      Public
      In house python script used for Højholt et al. 2019
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 6, 2019Jun 6, 2019