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| OpenWorm Docker Repository for the main Dockerfile with the complete OpenWorm software stack. Also hosts project-wide issues. |
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| c302 The c302 framework for generating multiscale network models of C. elegans |
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| Sibernetic A C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion |
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| owmeta Unified, simple data access python library for data & facts about C. elegans anatomy |
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| Hodgkin Huxley Tutorial A repository containing code for a number of tutorials on the Hodgkin Huxley model, including an interactive Jupyter notebook |
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| Muscle model - Boyle & Cohen 2008 Model of C. elegans body wall muscle based on Boyle & Cohen 2008 |
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| Muscle model - Johnson & Mailler 2015 C. elegans muscle model from Johnson & Mailler 2015 |
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| AWCon and RMD neuron models - Nicoletti et al. 2019 Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD |
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| NeuroPAL Scripts to analyse and convert NeuroPAL datasets |
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| Blender2NeuroML Conversion script to bring neuron models created in Blender into NeuroML format |
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| C. elegans Neuromechanical Gait Modulation C. elegans neuromechanical gait modulation model from Boyle, Berri and Cohen 2012 |
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| 2D worm body model Neuromechanical model of locomotion in C. elegans, originally developed by Eduardo Izquerdo, Erick Olivares and Randall Beer |
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| Repository | Tests | Tests (development) | PRs |
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| OpenWorm main website |
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| OpenWorm Documentation |
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| Repository | Tests | Tests (development) | PRs |
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| NeuroML Documentation |
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| OMV |
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| neuroConstruct |
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| NeuroML 2 |
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| pyNeuroML |
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