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Commits on Jul 11, 2016

• Simplify dependencies using Test::Prereq

  jimhester

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• Use file size if files exist

  jimhester

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• Add dependencies to Makefile.PL

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  jimhester

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Commits on Mar 15, 2016

• Merge pull request #4 from shenwei356/master

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  jimhester

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• fix scripts/in_list.pl

  shenwei356

  committed
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Commits on Sep 8, 2015

• Add install instructions to README and copyedit.

  jimhester

  committed
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• Add Makefile.PL and move library files to lib directory

  jimhester

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Commits on Mar 27, 2014

• Fix get_fasta

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  jimhester

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Commits on Aug 14, 2013

• Fix sort.pl and update documentation for fix_headers

  jimhester

  committed
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Commits on Jul 29, 2013

• Fix single end for filter_reads

  jimhester

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Commits on Jul 22, 2013

• Fix sorting by header or sequence

  jimhester

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Commits on May 14, 2013

• Update all scripts

  jimhester

  committed
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• sort and collapse with paired end sequences

  jimhester

  committed
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• Add phred quality trimming to trim_fasta

  jimhester

  committed
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Commits on May 13, 2013

• Add sequence_counts

  jimhester

  committed
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• Converts a bed and a reference to a fasta file

  jimhester

  committed
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• Add maf2bed, to convert a maf alignment to a bed file

  jimhester

  committed
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• Add grep.pl

  jimhester

  committed
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• Add ascii2csv

  jimhester

  committed
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• add_type script

  jimhester

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• Add collapse_duplicates

  jimhester

  committed
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• Allow passing of the filehandle directly for ReadFastx

  jimhester

  committed
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• Add bwa trimming to trim_fasta

  jimhester

  committed
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Commits on May 7, 2013

• Use full path in prefix

  jimhester

  committed
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Commits on Apr 11, 2013

• Add commify.pl, to commify numbers

  jimhester

  committed
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Commits on Apr 4, 2013

• Fix mpileup_counts raf calcuation

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  jimhester

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Commits on Mar 25, 2013

• Fix mpilup_counts to correctly handle deleted bases

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  jimhester

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Commits on Mar 4, 2013

• Remove pigz mapping from filter_reads.pl

  jimhester

  committed
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• Print calcN statistics as you go

  jimhester

  committed
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• Fix FileBar inactivity, simplify some things

  jimhester

  committed
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Commits on Feb 25, 2013

• Add mpilup_consensus script, some other clanges

  jimhester

  committed
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Commits on Feb 4, 2013

• Remove depreciated JimBar for FileBar

  jimhester

  committed
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• Modify liscense

  jimhester

  committed
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• Move scripts and tests into directories

  jimhester

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• Change README format slightly

  jimhester

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