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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(FgseaEnrichmentPlot)
export(PathwaysTable)
export(embedPathwaysResults)
export(embedPathwaysResultsMethods)
export(iSEEfgseaResults)
export(pathwaysResults)
export(pathwaysResultsNames)
export(simulateExampleData)
exportClasses(FgseaEnrichmentPlot)
exportClasses(PathwaysTable)
exportClasses(iSEEpathwaysResults)
exportMethods(.cacheCommonInfo)
exportMethods(.createObservers)
exportMethods(.defineDataInterface)
exportMethods(.defineInterface)
exportMethods(.defineOutput)
exportMethods(.fullName)
exportMethods(.generateOutput)
exportMethods(.generateTable)
exportMethods(.isBrushable)
exportMethods(.multiSelectionActive)
exportMethods(.multiSelectionCommands)
exportMethods(.multiSelectionDimension)
exportMethods(.panelColor)
exportMethods(.refineParameters)
exportMethods(.renderOutput)
exportMethods(.showSelectionDetails)
exportMethods(embedPathwaysResults)
exportMethods(featuresStats)
exportMethods(initialize)
exportMethods(pathwayType)
exportMethods(pathwaysList)
importClassesFrom(SummarizedExperiment,SummarizedExperiment)
importClassesFrom(iSEE,Panel)
importClassesFrom(iSEE,Table)
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,metadata)
importFrom(S4Vectors,setValidity2)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(ggplot2,aes)
importFrom(ggplot2,geom_rect)
importFrom(ggplot2,labs)
importFrom(iSEE,.addSpecificTour)
importFrom(iSEE,.createProtectedParameterObservers)
importFrom(iSEE,.defineDataInterface)
importFrom(iSEE,.getCachedCommonInfo)
importFrom(iSEE,.getEncodedName)
importFrom(iSEE,.getPanelColor)
importFrom(iSEE,.multiSelectionActive)
importFrom(iSEE,.organizationHeight)
importFrom(iSEE,.replaceMissingWithFirst)
importFrom(iSEE,.requestActiveSelectionUpdate)
importFrom(iSEE,.requestUpdate)
importFrom(iSEE,.retrieveOutput)
importFrom(iSEE,.selectInput.iSEE)
importFrom(iSEE,.selectizeInput.iSEE)
importFrom(iSEE,.setCachedCommonInfo)
importFrom(iSEE,.singleSelectionValue)
importFrom(iSEE,.textEval)
importFrom(iSEE,getAppOption)
importFrom(methods,"slot<-")
importFrom(methods,as)
importFrom(methods,callNextMethod)
importFrom(methods,new)
importFrom(methods,slot)
importFrom(methods,validObject)
importFrom(shiny,brushOpts)
importFrom(shiny,brushedPoints)
importFrom(shiny,hr)
importFrom(shiny,observeEvent)
importFrom(shiny,plotOutput)
importFrom(shiny,renderPlot)
importFrom(shiny,updateSelectizeInput)
importFrom(shinyWidgets,addSpinner)
importFrom(stats,rnbinom)
importFrom(stats,rnorm)
importMethodsFrom(iSEE,.cacheCommonInfo)
importMethodsFrom(iSEE,.createObservers)
importMethodsFrom(iSEE,.defineDataInterface)
importMethodsFrom(iSEE,.defineInterface)
importMethodsFrom(iSEE,.defineOutput)
importMethodsFrom(iSEE,.fullName)
importMethodsFrom(iSEE,.generateOutput)
importMethodsFrom(iSEE,.generateTable)
importMethodsFrom(iSEE,.isBrushable)
importMethodsFrom(iSEE,.multiSelectionActive)
importMethodsFrom(iSEE,.multiSelectionCommands)
importMethodsFrom(iSEE,.multiSelectionDimension)
importMethodsFrom(iSEE,.panelColor)
importMethodsFrom(iSEE,.refineParameters)
importMethodsFrom(iSEE,.renderOutput)
importMethodsFrom(iSEE,.showSelectionDetails)
importMethodsFrom(methods,initialize)