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Commits on Jun 10, 2025

• Merge pull request #139 from fmi-basel/debug

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• Update manifest.

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• Ignore hidden files when comparing directories from old to corrected zarr.

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• Debug channel handling in Apply Z-Illum task.

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• Remove unnecessary init_args from Calculate Z Illum task.

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Commits on Jun 6, 2025

• Handle case where object in zillum correction dictionary is missing.

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• Merge pull request #138 from fmi-basel/debug

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• Add option to fill holes after label fusion.

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• Add option to fill holes in expand labels task.

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• Expand and fuse labels task as Parallel tasks.

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Commits on Jun 4, 2025

• Update manifest.

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• Correct typo in documentation.

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• Update manifest.

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• Give user option to specify output linking table names.

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• Allow user to specify custom new label name output for all scmpx tasks.

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• Handle case where objects not present in all rounds.

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Commits on Jun 2, 2025

• Merge pull request #137 from fmi-basel/relabel

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• Refactor relabeling task to parallelize over chunks with dask.

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Commits on May 31, 2025

• Compatibility with ngio table spec for relabeling task.

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• Merge pull request #136 from fmi-basel/3dto2d

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Commits on May 30, 2025

• Disable codecov.

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• Update manifest.

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Commits on May 28, 2025

• Add Convert 3D to MIP task.

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Commits on May 27, 2025

• Add ngio and update python version to 3.11.

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• Update manifest.

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• Merge pull request #135 from fmi-basel/debug

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Commits on May 26, 2025

• Update documentation for feature extract task.

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Commits on May 23, 2025

• Check for disconnected components before generating surface mesh.

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• Add option to fill holes and filter by object volume in Surface Mesh Multiscale task.

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Commits on Mar 19, 2025

• Handle case where detected start and end of object are less than polynomial degree.

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• Catch ValueError when lmfit model generates NaN values in Calculate Z Illumination Correction task.

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• Add init to illumination module.

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Commits on Mar 10, 2025

• Add init_args to compound tasks even if empty.

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Commits on Mar 7, 2025

• Merge pull request #134 from fmi-basel/lumen

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Commits on Mar 6, 2025

• Update meshing functions and integration tests due to change from Canny to contour edge detection.

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