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py-wsi-fork

This is a fork of py-wsi (https://github.com/ysbecca/py-wsi). It contains the following additional functionality:

  • Conversion of segmentation ground truth (gt) provided in xml format to a region matching a certain DeepZoom level
  • Optionally storing the gt region together with the respective image patch in an LMDB item or on disk (previously it was only possible to assign a single label to each patch and not to store segmentation gt)
  • Functionality to display a WSI slide partitioned into patches together with its gt annotation
  • Bugfix related to a problem occurring when storing overlapping patches in the databases