adding bash scripts

fabibo3 · May 4, 2022 · eefcd36 · eefcd36
1 parent 1eddf3e
commit eefcd36
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diff --git a/build.sh b/build.sh
@@ -0,0 +1,5 @@
+#!/bin/bash
+#!/usr/bin/env bash
+SCRIPTPATH="$( cd "$(dirname "$0")" ; pwd -P )"
+
+docker build -t slcn_algorithm "$SCRIPTPATH" --rm
diff --git a/export.sh b/export.sh
@@ -0,0 +1,5 @@
+#!/usr/bin/env bash
+
+./build.sh
+
+docker save slcn_algorithm | gzip -c > SLCN_algorithm.tar.gz
diff --git a/test.sh b/test.sh
@@ -0,0 +1,41 @@
+#!/usr/bin/env bash
+
+SCRIPTPATH="$( cd "$(dirname "$0")" ; pwd -P )"
+
+./build.sh
+
+VOLUME_SUFFIX=$(dd if=/dev/urandom bs=32 count=1 | md5sum | cut --delimiter=' ' --fields=1)
+MEM_LIMIT="16g"  # Maximum is currently 30g, configurable in your algorithm image settings on grand challenge
+
+docker volume create slcn_algorithm-output-$VOLUME_SUFFIX
+
+# Do not change any of the parameters to docker run, these are fixed
+docker run --rm \
+        --memory="${MEM_LIMIT}" \
+        --memory-swap="${MEM_LIMIT}" \
+        --gpus 0 \
+        --network="none" \
+        --cap-drop="ALL" \
+        --security-opt="no-new-privileges" \
+        --shm-size="128m" \
+        --pids-limit="256" \
+        -v $SCRIPTPATH/test/:/input/images/cortical-surface-mesh/ \
+        -v slcn_algorithm-output-$VOLUME_SUFFIX:/output/ \
+        slcn_algorithm
+
+docker run --rm \
+        -v slcn_algorithm-output-$VOLUME_SUFFIX:/output/ \
+        python:3.9-slim cat /output/birth-age.json | python -m json.tool
+
+docker run --rm \
+        -v slcn_algorithm-output-$VOLUME_SUFFIX:/output/ \
+        -v $SCRIPTPATH/test/:/input/images/cortical-surface-mesh/ \
+        python:3.9-slim python -c "import json, sys; f1 = json.load(open('/output/birth-age.json')); f2 = json.load(open('/input/images/cortical-surface-mesh/expected_output.json')); sys.exit(f1 != f2);"
+
+if [ $? -eq 0 ]; then
+    echo "Tests successfully passed..."
+else
+    echo "Expected output was not found..."
+fi
+
+docker volume rm slcn_algorithm-output-$VOLUME_SUFFIX