Skip to content

cooljeanius/Environment-Modules

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

26 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

                             The Modules Package
                                Version 3.1
                               Originally by:
                               John L. Furlan
                               [email protected]
                                Peter W. Osel
                                 [email protected]
                                Jens  Hamisch
                          [email protected]
                                  R.K. Owen
                              [email protected]
                               2 October 1996
                                2 June 2000
                              This GitHub fork by:
                                Eric Gallager
                                    2013
  1. Introduction

This directory contains a copy of The Modules Package that uses Tcl (Tool Command Language) developed by John Ousterhout at Sun Microsystems. You must obtain a copy of Tcl (at least version 8.3). Tcl should be available either at the same site you obtained The Modules Package or from http://dev.scriptics.com/.

For an introduction to The Modules Package, see the paper, "Modules: Providing a Flexible User Environment", in the Proceeding of the 1991 Large Installation Systems Administrators USENIX Conference (USENIX LISA V). A copy of the paper is included in Postscript form in ./doc/Modules-Paper.ps. The paper describes the concepts behind Modules. It also includes a prototype/proof-of-concept implementation based on shell scripts being sourced into the user environment. The implementation details have changed, but the package concepts haven't.

  1. Documentation

The ./doc directory contains both the paper and man pages describing the user's and the module writer's usage. Look at ./ChangeLog for detailed information regarding changes.

Big changes to 3.2:

  • Using the automake/autoconf mechanism for creating the ./configure script.
  • Have the ./configure script test and set more things with regard to /bin/sh and /bin/csh characteristics.
  • Lots of code clean-up.
  • Made the tests conditional on configure options.
  • Handle the silent changes in Tcl 8.4

Big changes to 3.1:

  • Changed the license to GPL
  • Source code cross-referencing documented in ./xref/*.html files.

Big changes since 3.0 prior to 3.1:

  • Ported to Linux.
  • Removed any dependence on low-level Tcl routines.
  • Can use environment variable references in MODULEPATH for indirection.
  • Can switch between different versions of the module command.
  • Fixed "module whatis" to work as advertised.
  • Added the ./INSTALL document to aid in first-time and upgrading installations.
  • Fixed "module avail" and "module list" to show levels deeper than 2.
  • Added "is-loaded" and "module-info specified" to modulefile commands.

Big changes for 3.0:

  • Test-suite added
  • Support for Tcl/TclX 7.6 and Tk 4.2
  • Introduction of user levels for generation of error messages
  • Enhanced module logging facilities using stdout, stderr, files, and the syslog
  • Enhanced module trace feature
  • Modulefile configuration management. Symbolic module file names and aliases
  • Hierarchical modulecmd rc-file structure
  • Command line switches
  • Traceable output for module list and module command (configurable and on request)
  • Active dependency resolution. This is experimental at the moment!!!

Big changes for 2.3:

  • Support for Tcl/TclX 7.5 and Tk 4.1
  • Code cleanup. Added inline documentation. Unification of source module layouts.
  • Added alloc tracer for locating memory leaks
  • Added 'uname domain'.
  • Added M_HELP as a modetype, so that 'module-info mode [help]' will be possible
  • Optional support for extended Tcl (tclX) 7.x
  • Modules now uses the standard Tcl initialization (init.tcl), enabling autoloading of Tcl functions.

Big changes for 2.2:

  • Installation changed to use GNU's configure script (version 2.x).
  • Updated to support Tcl 7.x
  • Paths and modulefile names with '+'s in them should work now.
  • Multi-level paths should work. Well, at least better than 2.0.
  • "module load ." shouldn't dump core any more.
  • Support for "perl" output.
  • Ability to exit without having modulefile listed as "loaded". Use an argument to exit other than 0 or 1.
  • More stringent checking of user-level command names.
  • A sysconf.h file to help with multi-platform support. (This area and the installation process still needs work)
  • A new and improved cmdXResource.c

Big changes for 2.0:

  • Added a new environment variable, _LOADED_MODULEFILES_, which keeps track of the file and directory from which each modulefile was loaded. This is necessary for locating modulefiles if the MODULEPATH variable has changed or if a full pathname was specified as the modulefile to load.
  • Added an update sub-command which attempts to reload all of the currently loaded modulefiles. When Modules is first initialized a snapshot of the environment is saved into a file in the user's home directory. When the update sub-command is run, the environment variables are restored to their earlier state and the modulefiles are reloaded. Only the variables that modulefiles touch are changed.
  • Added a purge sub-command which unloads all currently loaded modulefiles.
  • set-alias should be fixed and should work for all shell types. In the case of the Bourne shell-variants, it creates functions.
  • If multiple modulefiles are listed to be added or removed and one of them has an error, only that modulefile will fail. All of the other modulefiles will load or unload successfully (assuming they don't in turn have errors).
  • INCOMPATABILITY ISSUE: stdout is not tied to stderr any more. So, if you to a 'puts stdout' in any of your modulefiles, that will go directly to the shell. You should change all puts statements that go to stdout to go to stderr instead.
  • avail prints out all of the modulefiles by recursively looking through all directories under every entry in MODULEPATH. It will also cache the information since it can take much longer than the previous version. Finally, only files containing the "#%Module" magic cookie header and that don't end in '~' will be listed. Other files will be ignored.
  • A .version file in a modulefile directory will be parsed to find out which modulefile is the default version for the directory name.
  • Locating modulefiles is recursive and ignores files ending in '~' and which don't have the "#%Module" magic header.
  • The switch command should really work now.
  • Added uname command for fast access to system information. (Not sure if uname is portable though)
  • Unload using a directory name will look for a version that is already loaded, instead of the default version specified by the .version file or by the highest lexicographical name in the directory.
  • Added ability for modulefile-specific help and modulefile-specific display.
  1. Building and Installing Modules

(Read the ./INSTALL file for a more recent description of installation procedures.)

First, you'll need to decide on a location to keep Modules on your network.

The path name to the initialization files must be the same on all of the systems using Modules. This is because your users' ~/.cshrc or other shell startup files must hard code this directory, in order to source their Modules initialization file.

You will also need to choose a location for the 'modulecmd' program and all of your modulefiles. The location of these can be different on different systems, but it is not recommended. These paths are used in the Modules initialization files. If you decide not to use this structure, then you will need to edit the initialization files by hand. Use the --prefix flag with the ./configure script to control the installation of Modules. See below for more configure options.

Example: If you decide to keep Modules in /depot/Modules, run "./configure --prefix=/depot/Modules"

	 initialization file   -->  /depot/Modules/init
	 modulefiles           -->  /depot/Modules/modulefiles
	 modulecmd             -->  /depot/Modules/bin
 	 manual pages          -->  /depot/Modules/man
 	 Tcl libraries	       -->  /depot/Modules/lib/tcl (if any)

The Modules Package is written in conformant ANSI C and should build on any UNIX machine with an ANSI C compiler like the GNU C compiler. Check the ./MACHINES file for a list of machines and OSes on which Modules has successfully been test-built. The module error logger requires the ANSI C 'stdarg.h' being installed. At the moment there's no support for traditional vargargs handling using 'varargs.h'.

To build Modules, first build Tcl and run the tests provided with Tcl to verify it built correctly.

If you want to use the test-suite, you should install dejagnu-1.2 or better before configuring modules. Be sure to have your PATH pointing to 'runtest' when calling './configure'.

Then run the GNU autoconf script, ./configure. A Makefile will be automatically generated.

Some Modules-specific configure options... (See also ./configure --help)

Autoconf @variable@'s can be passed along to the configure script, in particular for setting paths. The one of interest is @VERSION@ for using the current module version. e.g.: --prefix=/usr/local/Modules/@VERSION@


--with-etc-path=<path>      use etc path=<path>  [/etc]
--with-skel-path=<path>     use skel path=<path> [/etc/skel]
  • Place to find the csh.modules * profile.modules files and where the new user dot files are (both are needed by the add.modules script).
  • The skeleton user dot files need to point to the etc path for setting up Modules environment on login.

--with-split-size=<size>	With split size=<size> [TEST]
--without-split-size	Without  - "" -
  • Most C Shell implementations have a size requirement on the length of the line which can be evaluated. If you run into very long environment changes, you may run into this problem. Select size to be something less than the size your C Shell will accept. The ./configure script will test this in your /bin/csh up to 10,000 characters. If you do not specify anything, then ./configure will set the split-size for you if the limit it finds is less than 4000 characters. This can be overridden by specifying --with-split-size='some_value'. Specifying --without-split-size will disable this feature. Just specifying --with-split-size without a value will default to a value of 1000.

--enable-shell-funcs	With sh functions [TEST]
--disable-shell-funcs	Without  - "" -
  • Does your Bourne Shell support functions? If so, then the modulefile set-alias will work properly. If not, aliases will not be available when using the Bourne Shell. The default is to test your /bin/sh when configuring build, but specifying either option will override the tested characteristic.

--enable-shell-alias	With sh functions [TEST]
--disable-shell-alias	Without  - "" -
  • Does your Bourne Shell support aliases? A true Bourne Shell doesn't, but most are just a link to some other Bourne-like shell. If so, then Modules will use the alias mechanism when using set-alias. If not, aliases will not be available unless sh functions are supported when using the Bourne Shell. The default is to test your /bin/sh when configuring build, but specifying either option will override the tested characteristic.

--enable-shell-eval		With shell alias eval [DEF]
--disable-shell-eval	Without  - "" -
  • This specifies whether aliases will be evaluated by the shell or sourced from a temporary file. Some shells can't handle the specification of aliases in the eval line very well. To get around this problem, when aliases are set by a modulefile, a temporary file is created and then sourced into the shell. This guarantees the aliases are evaluated correctly, but may leave lots of cruft in the /tmp directory, which is generally not a good idea.

--enable-free		With free() calls
--disable-free		Without  - "" -	  [DEF]
  • Since the modulecmd is transient, disabling calls to free() can provide some small performance enhancements, since the memory usage is low, and the program will exit rapidly. If you want the calls to free() back in for some reason, set this option.

--enable-cache		With directory cache
--disable-cache		Without  - "" -	     [DEF]
  • Modules will maintain a cache of the available modulefiles for each directory in the modulefile search path. The cache greatly accelerates how long it takes to determine the list of available modulefiles, but for automatic cache updates this requires a world-writeable file.

--with-cache-umask=<umask> With cache files umask=<umask>
--without-cache-umask      0			     [DEF]
  • Set the umask for creating cache files. The default of 0 creates modulecachefiles that are writable by anyone. If you don't like world writable files, or mount the Modules file system read-only, set it to 002. Don't forget to occasionally refresh the cache files by running module avail with an account that has write permissions.

 --with-static		Link static (don't use dynamic libraries)
 --without-static		Use dynamic libraries			  [DEF]
  • A note. The original author found that at least the X11 libraries should be linked statically. If you encounter problems, e.g. getting some warnings about version mismatch of dynamic libraries, link the modulecmd statically.

  • If you're using Tcl/TclX 7.5 on a SunOS or Solaris box, the dynamic loader library (libdl.so.1) will be liked in. Since this is not available as a static library, using the --without-static flag here is recommended.


 --with-tclx		With extended TCL (tclX) commands
 --without-tclx		Without  - "" -			  [DEF]
  • Extended Tcl is a superset of standard Tcl and is built alongside the standard Tcl sources. It adds many new commands to standard Tcl, e.g. Unix Access Commands, File I/O Commands, String and Character Manipulation Commands, and so on... See the manual pages that come with tclX for a complete list of added features.

 --with-module-path=<path>	With user defined MODULEPATH
 --without-module-path	Default $prefix/modulefiles [DEF]
  • Set the MODULEFILE environment variable in all initialization files to the given <path> (colon separated!). The default is to use $prefix/modulefiles (which usually contains version-specific modulefiles).
  • Every site should use this to specify where local modulefiles are placed which are independent of module versions.

--with-version-path         use module path=<path>
                            [/usr/local/Modules/versions]
  • Place to put module version modulefiles for switching between different versions of the module command.

 --with-autoload-path=<path>	directories where Tcl will search
            					for libraries to load
 --without-autoload-path		Default $prefix/lib/tcl	[DEF]
  • <path> will be prepended to Tcl's auto_path variable. These directories are searched for library functions that can be autoloaded. Note that this path has to be space separated and enclosed in double quotes!! The default is to use "$prefix/lib/tcl".

 --with-tcl=<path>		directory containting Tcl configuration
        				(tclConfig.sh)
 --with-tclx=<path>		directory containting TclX configuration
        				(tclxConfig.sh)
  • The tclConfig.sh file was created when Tcl was built, and has pointers to where the libraries and header files were installed. It is usually found in $prefix/lib, where $prefix is the directory you installed Tcl. (The same goes for TclX, too.)

 --with-debug=<level>		Set up the debug level to the
        			        specified value
 --without-debug			Disable debugging [DEF]
  • The debug level will be set to the specified value. Available values may be looked up in 'modules_def.h'. Debugging may be configured in order to trace:
- module commands
- TCL interpreter initialization
- callback functions
- module file localization
- utility functions

Enable this feature for debugging only! The higher the debugging level, the greater the amount of runtime information printed! All debug messages will be spooled to .

The debug-level cannot be changed at runtime at the moment! It is configured as a fixed value at compile time!


 --enable-version-magic             set .version magic requirement[DEF]
 --disable-version-magic            unset requirement
  • Enable or disable the requirement that .version files need the "#%Module1.0" magic cookie (at the file start) to be properly recognized and parsed.

NO LONGER AVAILABLE --enable-parseable-msgs Configure parseable error messages --disable-parseable-msgs Use the traditional ones

  • Switch between traditional error messages in multi-line format or parse-able ones that look like the GNU messages. The parse-able message format is (was):
    	module(line):Message-Type:Message-Number: Text

with Message-Type being one of:

`INFO`, `WARNING`, `PROBLEM`, `ERROR`, `FATAL`, `PANIC`, `DEBUG`

along with a unique message id in decimal format.


  --enable-logging                  Enable the module logging feature
  --disable-logging                 No module logging [DEF]
  --with-log-facility-verbose[=<facility>] 
  --with-log-facility-info[=<facility>]
  --with-log-facility-debug[=<facility>]
  --with-log-facility-debug[=<facility>]
  --with-log-facility-warn[=<facility>]
  --with-log-facility-problem[=<facility>]
  --with-log-facility-problem[=<facility>]
  --with-log-facility-fatal[=<facility>]
  --with-log-facility-panic[=<facility>]
  • Turn logging on and define the logging facilities for the different error levels. Each facility may be either a syslog-facility, such as 'local7.debug', a standard stream as 'stderr', a filename, or the word 'no' for disabling a single log facility.

  --with-trace-load=<value>  
  --with-trace-unload=<value>
  --with-trace-switch=<value>
  --with-trace-disp=<value>
  --with-trace-list=<value>
  --with-trace-avail=<value>
  --with-trace-help=<value>
  --with-trace-init=<value>
  --with-trace-use=<value>
  --with-trace-unuse=<value>
  --with-trace-update=<value>
  --with-trace-purge=<value>
  --with-trace-clear=<value>
  --with-trace-whatis=<value>
  --with-trace-apropos=<value>
  • Turns tracing for the specific module command on or off. The value is a list of colon separated TCL regular expressions matching the module files to be traced. This maybe overridden using the 'module-trace' command. See 'modulefile(4)' for detailed information.

A number of example modulefiles have been provided in the ./example-modulefiles directory. This should help provide you with some idea on how to write modulefiles.

If you upgrade from a previous module version and have adapted the MODULEPATH environment variable in your installed init files, don't forget to set the MODULEFILE in the configuration step: (See the ./INSTALL document for more current information.)

	./configure --with-module-path=$MODULEPATH

Just type 'make' and it should build.

If you have dejagnu installed, you may want to run the test-suite now. Type 'make check' and it should run.

Finally, type 'make install', and then 'modulecmd' (along with the initfiles) will be installed.

  1. [email protected]

As of release 2.0, the original author has worked with Richard Elling to create a Modules interest alias for discussion about Modules, as well as other Modules-related packages, such as Richard's user-setup.

The email list was moved from eng.auburn.edu to SourceForge.net with version 3.0. If you would like to be added to the modules-interest alias, email [email protected] with "subscribe modules-interest address" in the body of the message where "address" is your Internet e-mail address.

  1. Miscellaneous

tcsh(1) users might want to add the following to their tcsh startup file (~/.cshrc or ~/.tcshrc):

    # program tcsh's completion for module command:
    complete module \
    	'n/use/d/' \
    	'n/unuse/d/' \
    	'n/*/(load unload switch display avail use \
    		unuse update purge list clear help \
    		initadd initrm initswitch initlist initclear)/'

You might want to add the following line to /etc/magic, so that file(1) recognizes modulefiles:

    #
    # Environment Modules modulefiles
    #
    0	string		#%Module1.0	Environment Modules version 1.0
  1. Special Thanks

Ken Manheimer and Don Libes at the National Institute of Standards and Technology deserve special thanks. This is for their help and ideas toward the original paper, design considerations, and the use of Tcl.

Maureen Chew and others at Sun Microsystems provided the original author with a test site. They also provided the original author with many ideas on how to improve his Tcl implementation of Modules.

Leif Hedstrom added GNU's autoconf support, x-resource command, helped significantly with the port to Tcl 7.x, and has provided valuable input.

The original author would also like to thank Richard Elling at Auburn University for his comments, help with the Modules' man pages and his application 'user-setup'. A paper on 'user-setup' was presented at this year's USENIX LISA VI conference. The paper and the application can be acquired via anonymous ftp from ftp.eng.auburn.edu.

Peter W. Osel <[email protected]> added support for Extended Tcl (TclX), autoloading of Tcl functions, autoconf 2.x;

There are many others that deserve thanks but too many to list here -- thanks to everyone who has helped.

R.K.Owen <[email protected]> added the modules versioning, ported to Linux, reworked the code to use higher level Tcl calls eliminating the need for Tcl internal header files, various code fixes and changes, added some useful scripts, and is the current maintainer of the modules-3.1 distribution.

Robert Minsk <[email protected]>, added the "module-info specified" and the "is-loaded" modulefile commands, and for various code and script fixes.

Further & updated list of contributors can be found in the ./ChangeLog file.

  1. Bugs and Comments

Report bugs to '[email protected]'. Please try to provide a full environment listing and a copy of the modulefiles you're trying to manipulate. Be as explicit and detailed as possible.

Comments and suggestions for improvement are always welcome.

  1. Getting the Sources

There are two mainways to get the sources. If you just intend to use modules and have no interest in modifying or improving them, then get them via anonymous ftp from:

    Primary-site:	ftp1.sourceforge.net	/pub/sourceforge/m/mo/modules
    Alternate-site:	sunsite.unc.edu		/pub/Linux/utils/shell/
    Alternate-site: owen.sj.ca.us		/pub/rkowen/modules/

However, if you have coding expertise and wish to contribute code modifications, or if you want the ``bleeding edge'' latest sources, then get them via the Modules CVS repository server:

This will download the current checked-in version:

cvs -d:pserver:[email protected]:/cvsroot/modules login

Just hit return when prompted for the password.

cvs -d:pserver:[email protected]:/cvsroot/modules \
checkout modules 

(The preceding commands may be wrong - visit http://modules.sf.net for other CVS download instructions.)

If you have modules installed already from a recent distribution, then you can use the aliases defined by the module-cvs modulefile. Typically, it can be loaded with:

    module load modules module-cvs

Then use the modules-login and modules-get aliases.

You will need recent versions of automake and autoconf if you use the CVS version of modules.

After your initial checkout you must run the command:

     % autoreconf -f -i

to generate the rest of the build infrastructure.

For a brief HOWTO on CVS, read http://kooz.sj.ca.us/rkowen/howto/cvsF.html.

To contribute code patches, please "cvs diff -u" them against the modules CVS repository.

If you are viewing this on GitHub, you can also get the sources via git, just be aware that is a fork and not the original sources.

Thanks, John L. Furlan (with additions by R.K.Owen and Harlan Stenn) (rewritten in Markdown by Eric Gallager for GitHub)