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Understanding glm file #1

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andkov opened this issue Mar 2, 2017 · 0 comments
Open

Understanding glm file #1

andkov opened this issue Mar 2, 2017 · 0 comments
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@andkov
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andkov commented Mar 2, 2017

@josephmbaker ,
I've started importing the files and this and going great. I was hoping you could clarify what I am looking at, that would give me better understanding of how to proceed. Could you please describe each element in a sentence or two? or give any other commentary? We'll use these issues as part of the documentation, so your effort won't be wasted.

Here's what the glm file crNirs_glm_gng_056_63_m_f1 looks like after importing it into R. Please explain the names and dimensions of each element

$beta
               [,1]          [,2]          [,3]
 [1,] -1.882692e-08 -1.408142e-07  5.984861e-08
 [2,]  1.513796e-07  3.025009e-08 -6.608051e-09
 [3,]  8.448469e-08  1.229771e-07  8.468912e-08
 [4,] -3.449260e-08 -1.324333e-07  7.030542e-08
 [5,] -1.852479e-08 -8.743323e-08  4.632691e-08
 [6,] -4.691206e-10 -7.113097e-08  6.902852e-08
 [7,]  7.401834e-08  1.212359e-07  1.395920e-07
 [8,]  1.222419e-07  3.656552e-08  2.067630e-07
 [9,]  1.941796e-07  1.077029e-07  8.523552e-08
[10,] -4.346556e-08 -6.370523e-08  2.201303e-07
[11,] -1.487526e-07 -1.099612e-07  1.598105e-07
[12,] -3.587509e-09  1.151820e-07  1.555781e-07
[13,] -8.243521e-08 -6.330389e-09  7.639094e-08
[14,] -5.173653e-08  2.401113e-08  4.574408e-08
[15,] -1.352566e-08  3.789480e-08 -2.430326e-08
[16,] -4.222510e-08  1.121421e-07 -1.817481e-08
[17,] -2.128655e-08 -5.417146e-08  2.425865e-08
[18,] -1.486245e-08 -5.247911e-08  4.356805e-09

$T
              [,1]        [,2]       [,3]
 [1,]  -2.04734044 -15.2574815  7.4551248
 [2,]  12.02739371   2.3947303 -0.6014059
 [3,]   4.10118927   5.9481472  4.7092253
 [4,]  -3.38813454 -12.9615642  7.9106754
 [5,]  -1.71654012  -8.0724022  4.9172697
 [6,]  -0.04611604  -6.9670967  7.7729529
 [7,]   4.43286379   7.2343878  9.5762508
 [8,]   8.56789735   2.5535921 16.6003381
 [9,]  12.22339910   6.7552495  6.1460914
[10,]  -2.98395356  -4.3576022 17.3107831
[11,] -12.89969774  -9.5012344 15.8748805
[12,]  -0.33786096  10.8082483 16.7835406
[13,]  -8.92571076  -0.6829457  9.4746241
[14,]  -4.87159794   2.2527466  4.9339996
[15,]  -1.29459855   3.6139477 -2.6645945
[16,]  -6.38558547  16.8975822 -3.1484010
[17,]  -2.82589192  -7.1655005  3.6889861
[18,]  -1.82936412  -6.4360861  0.6142821

$P
              [,1]         [,2]         [,3]
 [1,] 4.067632e-02 2.029736e-51 1.050770e-13
 [2,] 7.152634e-33 1.666884e-02 5.475967e-01
 [3,] 4.174986e-05 2.894534e-09 2.553226e-06
 [4,] 7.090826e-04 8.063873e-38 3.121971e-15
 [5,] 8.612458e-02 8.545083e-16 9.054218e-07
 [6,] 9.632196e-01 3.650509e-12 9.228359e-15
 [7,] 9.496126e-06 5.378187e-13 1.532294e-21
 [8,] 1.382660e-17 1.069094e-02 2.682044e-60
 [9,] 6.994986e-34 1.586882e-11 8.551545e-10
[10,] 2.859128e-03 1.341052e-05 2.896408e-65
[11,] 1.757178e-37 3.118086e-21 2.035021e-55
[12,] 7.354820e-01 6.191496e-27 1.463447e-61
[13,] 6.091552e-19 4.946725e-01 4.006704e-21
[14,] 1.140837e-06 2.431790e-02 8.315112e-07
[15,] 1.955180e-01 3.045079e-04 7.732635e-03
[16,] 1.860549e-10 2.359974e-62 1.651236e-03
[17,] 4.733444e-03 8.867807e-13 2.275193e-04
[18,] 6.740403e-02 1.339458e-10 5.390566e-01

$ngVgo
            [,1]
 [1,] -13.210141
 [2,]  -9.632663
 [3,]   1.846958
 [4,]  -9.573430
 [5,]  -6.355862
 [6,]  -6.920981
 [7,]   2.801524
 [8,]  -6.014305
 [9,]  -5.468150
[10,]  -1.373649
[11,]   3.398463
[12,]  11.146109
[13,]   8.242765
[14,]   7.124345
[15,]   4.908546
[16,]  23.283168
[17,]  -4.339609
[18,]  -4.606722

$ngVrest
             [,1]
 [1,] -22.7126063
 [2,]   2.9961362
 [3,]   1.2389219
 [4,] -20.8722396
 [5,] -12.9896719
 [6,] -14.7400496
 [7,]  -2.3418629
 [8,] -14.0467460
 [9,]   0.6091581
[10,] -21.6683853
[11,] -25.3761149
[12,]  -5.9752923
[13,] -10.1575698
[14,]  -2.6812530
[15,]   6.2785422
[16,]  20.0459832
[17,] -10.8544866
[18,]  -7.0503682

$goVrest
            [,1]
 [1,]  -9.502465
 [2,]  12.628800
 [3,]  -0.608036
 [4,] -11.298810
 [5,]  -6.633810
 [6,]  -7.819069
 [7,]  -5.143387
 [8,]  -8.032441
 [9,]   6.077308
[10,] -20.294737
[11,] -28.774578
[12,] -17.121402
[13,] -18.400335
[14,]  -9.805598
[15,]   1.369996
[16,]  -3.237184
[17,]  -6.514878
[18,]  -2.443646

$sLoc
       ngVgo     ngVrest    goVrest
       <dbl>       <dbl>      <dbl>
1 -13.210141 -22.7126063  -9.502465
2   1.846958   2.9961362  12.628800
3  -6.355862 -12.9896719  -6.633810
4   2.801524   0.6091581   6.077308
5  11.146109  -5.9752923 -17.121402
6   7.124345   6.2785422   1.369996
7  23.283168  20.0459832  -3.237184
8  -4.606722  -7.0503682  -2.443646
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