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Commits on Jul 14, 2020

• Updated generate_seqs_from_VCF.py description

  singing-scientist

  committed
  d41321e

• Initial commit, generate_seqs_from_VCF.py

  Show description for 946ec42
  singing-scientist

  committed
  946ec42

Commits on Feb 17, 2019

• Update README.md

  singing-scientist

  authored
  10d01ed

• Update README.md

  singing-scientist

  authored
  f131611

• Update README.md

  singing-scientist

  authored
  e042586

Commits on Jul 27, 2018

• Added example line

  singing-scientist

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  995a881

• INITIAL COMMIT: align_codon2aa.pl

  singing-scientist

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  653ac6c

Commits on May 30, 2018

• Update aligned_fasta2site_nt_freqs.pl

  Show description for 4a18055
  singing-scientist

  committed
  4a18055

• Initial commit: haplotypes_provided_sites.pl

  singing-scientist

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  49f07df

• Initial commit: reverse_complement.pl

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  1d285d0

• File conversion for SNPGenie now deprecated; user's responsibility

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  4ae9368

Commits on May 1, 2018

• Added k-mer size functionality and added input filename to output

  singing-scientist

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  52808f4

• count_k-mers initial commit

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  971f2c1

Commits on Mar 31, 2018

• Added additional statistics at end results

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  efb17c4

• Updated LinkGe script to accept only 3 SNP report headers, and improved README

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  6fe9fa2

• LinkGe_all_site_pairs.pl INITIAL COMMIT

  singing-scientist

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  f96a9cb

• Added capability for groups to consist of 1 sequence

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  81e1215

Commits on Mar 28, 2018

• Improved formatting by adding spaces

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  3806064

• Allow the header to have more characters

  Show description for d70430f
  singing-scientist

  committed
  d70430f

• Added a SNP report format output file

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  55e7e3a

• Updated within-script example call

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  12294d1

Commits on Dec 15, 2017

• Initial commit of aligned_fasta2site_nt_freqs.pl

  

  Chase W. Nelson

  authored and

  Chase W. Nelson

  committed
  350e100

• Initial commit of determine_consensus_IUPAC_seqs.pl

  

  Chase W. Nelson

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  Chase W. Nelson

  committed
  3cbf8ec

Commits on Dec 14, 2017

• Updated generate_reverse_complement_gtf subroutine

  Show description for 5f93343
  

  Chase W. Nelson

  authored and

  Chase W. Nelson

  committed
  5f93343

Commits on Dec 13, 2017

• Update vcf2revcom description

  

  Chase W. Nelson

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  Chase W. Nelson

  committed
  bc1a2f4

Commits on Dec 11, 2017

• Residues not fulfilling criteria in any one group are reported as NA at otherwise group-defining sites

  

  Chase W. Nelson

  authored and

  Chase W. Nelson

  committed
  c0bc107

Commits on Nov 17, 2017

• Updated aligned_fasta_group_diffs

  Show description for dbeab17
  

  Chase W. Nelson

  authored and

  Chase W. Nelson

  committed
  dbeab17

• Initial commit of aligned_fasta_group_diffs

  

  Chase W. Nelson

  authored and

  Chase W. Nelson

  committed
  7077d91

Commits on Nov 16, 2017

• Initial commit get_unique_values

  

  Chase W. Nelson

  authored and

  Chase W. Nelson

  committed
  8215b61

Commits on Nov 15, 2017

• Initial commit remove_seqs_with_stops

  

  Chase W. Nelson

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  Chase W. Nelson

  committed
  1102a63

Commits on Nov 14, 2017

• Initial commit extract_codon_from_ANN_VCFs

  

  Chase W. Nelson

  authored and

  Chase W. Nelson

  committed
  bc1bc9e

• Changed example syntax

  

  Chase W. Nelson

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  Chase W. Nelson

  committed
  9b3b229

• Initial commit get_random_integers

  Show description for 8a42961
  

  Chase W. Nelson

  authored and

  Chase W. Nelson

  committed
  8a42961

Commits on Nov 12, 2017

• Improved description of vcf2revcom.pl

  

  Chase W. Nelson

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  Chase W. Nelson

  committed
  648e061

• Added hyperlinks for GTF and SNPGenie

  

  Chase W. Nelson

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  Chase W. Nelson

  committed
  fd85a15

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