Skip to content

Issues: biocore/calour

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

62 Open 52 Closed
62 Open 52 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Python older versions comparability
#311 opened Nov 21, 2024 by baobabprince
add bargraph alternative to heatmap enhancement
#305 opened Jul 4, 2024 by amnona
join_experiments() raises as pandas future warning bug
#303 opened Jun 10, 2024 by amnona
add documentation for new functions/modules enhancement
#301 opened May 30, 2024 by amnona
Add permanova support enhancement
#300 opened May 30, 2024 by amnona
command history for save and load enhancement
#299 opened May 30, 2024 by amnona
No documentation for new version?
#294 opened Apr 8, 2024 by DrJStrudwick
New versions not on pypi?
#293 opened Apr 8, 2024 by DrJStrudwick
working with small/negative values bug
#291 opened Apr 4, 2024 by amnona
filter_samples does not work with numpy array for value bug
#290 opened Apr 4, 2024 by amnona
use pandas data frame as metadata input
#288 opened Aug 30, 2023 by baobabprince
add option to drop if exists the new column in join_metadata_fields() enhancement
#285 opened Feb 9, 2023 by amnona
when doing cluster_features for metaphlan output (shotgun metagenomics), need to set different presence threshold
#284 opened Jan 23, 2023 by amnona
filter_samples does not work when supplying values as a numpy array bug
#283 opened Jan 17, 2023 by amnona
missing documentation in the calour .io docs for to/from pandas enhancement
#282 opened Jan 12, 2023 by amnona
set default (white) for missing colors in barx_colors in plot()
#270 opened Jun 29, 2022 by amnona
enable rotation for barx_label_kwargs in plot()
#269 opened Jun 29, 2022 by amnona
raise appropriate error when plotting an empty experiment
#268 opened Jun 10, 2022 by amnona
Installation problems
#267 opened Apr 24, 2022 by baobabprince
Problem with rarifying unnormalized experiments bug
#265 opened Mar 15, 2022 by amnona
raise warning if value does not exist in diff_abundance
#264 opened Dec 1, 2021 by amnona
filter_prevalence() field parameter not working bug
#262 opened Nov 29, 2021 by amnona
enable single value input in filter_by_metadata()
#261 opened Nov 15, 2021 by amnona
norm() for heatmap - maybe supply also a string option for "linear" or "log" enhancement
#259 opened Oct 1, 2021 by amnona
io.read() has the sep='\t' set so cannot re-set it in the sample_metadata_kwargs bug
#258 opened Oct 1, 2021 by amnona
ProTip! Adding no:label will show everything without a label.