# Generated by roxygen2: do not edit by hand

S3method(melt,SingleCellAssay)

S3method(plot,thresholdSCRNACountMatrix)

S3method(print,summaryThresholdSCRNA)

S3method(print,summaryZlmFit)

export("cData<-")

export("layer<-")

export("layername<-")

export(CoefficientHypothesis)

export(FluidigmAssay)

export(FromMatrix)

export(Hypothesis)

export(LRT)

export(SCASet)

export(SingleCellAssay)

export(addlayer)

export(bootVcov1)

export(burdenOfFiltering)

export(cData)

export(calcZ)

export(cellData)

export(coef)

export(combined_residuals_hook)

export(computeEtFromCt)

export(condSd)

export(condmean)

export(continuous_residuals_hook)

export(defaultPrior)

export(deviance_residuals_hook)

export(discrete_residuals_hook)

export(expavg)

export(fData)

export(filter)

export(filterLowExpressedGenes)

export(freq)

export(getConcordance)

export(getLogFC)

export(getrc)

export(getss)

export(getwellKey)

export(getwss)

export(gseaAfterBoot)

export(hushWarning)

export(influence.bayesglm)

export(lapply)

export(layer)

export(layername)

export(logFC)

export(logmean)

export(lrTest)

export(myBiplot)

export(nlayer)

export(numexp)

export(pbootVcov1)

export(plotSCAConcordance)

export(plotlrt)

export(primerAverage)

export(read.fluidigm)

export(rstandard.bayesglm)

export(score_2_hook)

export(score_hook)

export(shalek_weights)

export(subset)

export(summary)

export(summary.thresholdSCRNACountMatrix)

export(thresholdNanoString)

export(thresholdSCRNACountMatrix)

export(todt)

export(vcov)

export(waldTest)

export(xform)

export(zlm)

export(zlm.SingleCellAssay)

exportClasses(RNASeqAssay)

exportMethods("[")

exportMethods("[[")

exportMethods("[[<-")

exportMethods("cData<-")

exportMethods("exprs<-")

exportMethods("layer<-")

exportMethods("layername<-")

exportMethods(LRT)

exportMethods(addlayer)

exportMethods(cData)

exportMethods(combine)

exportMethods(exprs)

exportMethods(featureData)

exportMethods(layer)

exportMethods(layername)

exportMethods(nlayer)

exportMethods(sampleNames)

exportMethods(se.coef)

exportMethods(show)

exportMethods(split)

exportMethods(subset)

exportMethods(summary)

exportMethods(vcov)

import(Biobase)

import(BiocGenerics)

import(abind)

import(data.table)

import(methods)

import(reshape)

import(stringr)

importFrom(ggplot2,aes)

importFrom(ggplot2,aes_string)

importFrom(ggplot2,facet_wrap)

importFrom(ggplot2,geom_line)

importFrom(ggplot2,geom_point)

importFrom(ggplot2,geom_segment)

importFrom(ggplot2,ggplot)

importFrom(ggplot2,scale_x_continuous)

importFrom(ggplot2,scale_y_continuous)

importFrom(ggplot2,theme_bw)

importFrom(ggplot2,ylim)

importFrom(lattice,barchart)

importFrom(plyr,aaply)

importFrom(plyr,ddply)

importFrom(plyr,is.formula)

importFrom(plyr,laply)

importFrom(plyr,ldply)

importFrom(plyr,raply)

importFrom(plyr,rbind.fill)

importFrom(stats,influence)

importFrom(stats,rstandard)

importMethodsFrom(Biobase,"sampleNames<-")

importMethodsFrom(Biobase,fData)

importMethodsFrom(Biobase,featureData)

importMethodsFrom(Biobase,sampleNames)