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enable gpu load nifti #8188

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enable gpu load nifti #8188

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84d8cf3
enable gpu load nifti
yiheng-wang-nv Nov 2, 2024
ca1cfb8
fix issue
yiheng-wang-nv Nov 2, 2024
d3551cc
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Nov 2, 2024
01a21e0
update loadimage
yiheng-wang-nv Nov 2, 2024
be77a45
add init
yiheng-wang-nv Nov 2, 2024
b4a747c
update filename
yiheng-wang-nv Nov 2, 2024
f6af120
update supported reader
yiheng-wang-nv Nov 2, 2024
009fdf7
update load image call
yiheng-wang-nv Nov 2, 2024
27d218a
remove useless header
yiheng-wang-nv Nov 2, 2024
1baa31b
add filename
yiheng-wang-nv Nov 2, 2024
da41742
Merge branch 'dev' into add-gds-support-on-niftireader
yiheng-wang-nv Nov 8, 2024
f453158
reformat to add gpu load support on nibabelreader
yiheng-wang-nv Nov 8, 2024
8d8ba0f
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Nov 8, 2024
617729e
Merge branch 'dev' into add-gds-support-on-niftireader
yiheng-wang-nv Nov 27, 2024
59eccd4
Merge branch 'dev' into add-gds-support-on-niftireader
yiheng-wang-nv Dec 12, 2024
7eb890f
update
yiheng-wang-nv Dec 12, 2024
a62b1dc
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Dec 12, 2024
5f9ac06
update to_cupy
yiheng-wang-nv Dec 12, 2024
d052a5f
add tests
yiheng-wang-nv Dec 13, 2024
a987a94
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Dec 13, 2024
1b12a39
add description on warm up
yiheng-wang-nv Dec 13, 2024
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add filename 
Signed-off-by: Yiheng Wang <[email protected]>
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@yiheng-wang-nv
yiheng-wang-nv committed Nov 2, 2024
commit 1baa31b85fc887dd009f600c9db69964669c0dc7
2 changes: 2 additions & 0 deletions monai/transforms/io/array.py
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Expand Up @@ -261,6 +261,7 @@ def __call__(self, filename: Sequence[PathLike] | PathLike, reader: ImageReader
# TODO: handle multiple filenames later
buffer = reader.read(filename[0])
img = reader.get_data(buffer)
img.meta[Key.FILENAME_OR_OBJ] = filename[0]
# TODO: check ensure channel first
if self.ensure_channel_first:
img = EnsureChannelFirst()(img)
Expand All @@ -281,6 +282,7 @@ def __call__(self, filename: Sequence[PathLike] | PathLike, reader: ImageReader
# TODO: handle multiple filenames later
buffer = reader.read(filename[0])
img = reader.get_data(buffer)
img.meta[Key.FILENAME_OR_OBJ] = filename[0]
# TODO: check ensure channel first
if self.ensure_channel_first:
img = EnsureChannelFirst()(img)
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