RMATPATH = mtspgemm2017/GTgraph/R-MAT

SPRNPATH = mtspgemm2017/GTgraph/sprng2.0-lite

SEQANPATH = seqan

include mtspgemm2017/GTgraph/Makefile.var

INCLUDE = -I$(SPRNPATH)/include #-I$(CURDIR)/libgaba

SEQINCLUDE = -I$(SEQANPATH)

MLKINCLUDE = -I/opt/intel/composer_xe_2015.0.039/mkl/include

LIBPATH = -L/opt/intel/composer_xe_2015.0.039/mkl/lib

COMPILER = g++

CC = gcc

CFLAGS = -I. -O3 -W -Wall -Wextra -pedantic -ansi -c

#SEQFLAGS = -DSEQAN_ARCH_SSE4=1 -DSEQAN_ARCH_AVX2=1 -DSEQAN_BGZF_NUM_THREADS=1

sprng:

(cd $(SPRNPATH); $(MAKE); cd ../..)

rmat: sprng

(cd $(RMATPATH); $(MAKE); cd ../..)

LIBS = -L$(CURDIR)/libbloom/build -lbloom #-L$(CURDIR)/libgaba -lgaba

Buffer.o: kmercode/Buffer.c

$(CC) -O3 -fopenmp -c -o Buffer.o kmercode/Buffer.c

bound.o: kmercode/bound.cpp

$(CC) -O3 -fopenmp -c -o bound.o kmercode/bound.cpp

fq_reader.o: kmercode/fq_reader.c

$(CC) -O3 -std=gnu99 -fopenmp -c -o fq_reader.o kmercode/fq_reader.c

hash_funcs.o: kmercode/hash_funcs.c

$(CC) -O3 -fopenmp -c -o hash_funcs.o kmercode/hash_funcs.c

bloomlib:

$(MAKE) -C libbloom all

#gabalib:

# $(MAKE) -C libgaba all

optlist.o: optlist/optlist.c optlist/optlist.h

$(CC) $(CFLAGS) $<

Kmer.o: kmercode/Kmer.cpp

$(COMPILER) -fopenmp -std=c++11 -O3 -c -o Kmer.o kmercode/Kmer.cpp

# flags defined in mtspgemm2017/GTgraph/Makefile.var

bella: main.cpp hash_funcs.o fq_reader.o Buffer.o Kmer.o bound.o optlist.o rmat bloomlib

#gabalib

$(COMPILER) -std=c++14 -O3 $(INCLUDE) -march=native -fopenmp -fpermissive $(SEQINCLUDE) -o bella hash_funcs.o Kmer.o Buffer.o fq_reader.o bound.o optlist.o main.cpp ${LIBS}

# makes evaluation

result:

(cd bench; make result; cd ..)

# add -D__LIBCUCKOO_SERIAL to run lubcuckoo in a single thread

clean:

(cd mtspgemm2017/GTgraph; make clean; cd ../..)

rm -f *.o

rm -f bella

$(MAKE) -C libbloom clean

$(MAKE) -C libgaba clean