Merge pull request #254 from OuhscBbmc/dev

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OuhscBbmc · Sep 22, 2019 · 1f3c24b · 1f3c24b
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diff --git a/CRAN-RELEASE b/CRAN-RELEASE
@@ -1,2 +1,2 @@
-This package was submitted to CRAN on 2019-09-21.
-Once it is accepted, delete this file and tag the release (commit 6d76e90b4c).
+This package was submitted to CRAN on 2019-09-22.
+Once it is accepted, delete this file and tag the release (commit c2830c824a).
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -6,7 +6,7 @@ Description: Encapsulates functions to streamline calls from R to the REDCap
     University.  The Application Programming Interface (API) offers an avenue
     to access and modify data programmatically, improving the capacity for
     literate and reproducible programming.
-Version: 0.10.1
+Version: 0.10.2
 Date: 2019-09-20
 Authors@R: c(person("Will", "Beasley", role = c("aut", "cre"), email =
     "[email protected]", comment = c(ORCID = "0000-0002-5613-5006")),

diff --git a/NEWS.md b/NEWS.md
@@ -5,7 +5,7 @@ In the future:
 * `redcap_read()` and `redcap_read_oneshot()` allows caller to specify data types for columns.
 
 
-Version 0.10 (to be released)
+Version 0.10 (Released 2019-09-22)
 ==========================================================
 
 ### Minor New Features
@@ -39,6 +39,7 @@ Version 0.10 (to be released)
 * the checkmate package inspects most function parameters now (instead of `testit::assert()` and `base:stop()` ) (#190 & #208).
 * `collapse_vector()` is refactored and tested (#209)
 * remove dependency on `pkgload` package (#218)
+* Update Markdown syntax to new formatting problems (#253)
 
 ### Deprecated Features
 * `retrieve_token_mssql()`, because `retrieve_credential_mssql()` is more general and more useful.

diff --git a/README.md b/README.md
@@ -1,7 +1,7 @@
 [REDCapR](https://github.com/OuhscBbmc/REDCapR)  <img src="man/figures/logo.png" align="right" width="130" />
 =======
 
-We’ve been using R with [REDCap](https://projectredcap.org/)’s API since 2012 and have developed   [`REDCapR`](https://github.com/OuhscBbmc/REDCapR).  Before encapsulating these functions in a package, we were replicating 50+ lines of code to contact REDCap and robustly transform the returned [csv](https://en.wikipedia.org/wiki/Comma-separated_values) into an R [`data.frame`](https://stat.ethz.ch/R-manual/R-devel/library/base/html/data.frame.html); it took twice that much to implement batching.  All this can be done in one call to [`redcap_read()`](https://ouhscbbmc.github.io/REDCapR/reference/redcap_read.html):
+We’ve been using R with [REDCap](https://projectredcap.org/)’s API since 2012 and have developed   [`REDCapR`](https://github.com/OuhscBbmc/REDCapR).  Before encapsulating these functions in a package, we were replicating 50+ lines of code to contact REDCap and robustly transform the returned [csv](https://en.wikipedia.org/wiki/Comma-separated_values) into an R `data.frame`; it took twice that much to implement batching.  All this can be done in one call to [`redcap_read()`](https://ouhscbbmc.github.io/REDCapR/reference/redcap_read.html):
 
 ```r
 ds <- redcap_read(redcap_uri=uri, token=token)$data
@@ -52,7 +52,7 @@ Also checkout the other packages that exist for communicating with REDCap, which
 
 
 ### Collaborative Development
-We encourage input and collaboration.  If you're familiar with GitHub and R packages, feel free to submit a [pull request](https://github.com/OuhscBbmc/REDCapR/pulls).  If you'd like to report a bug or make a suggestion, please create a GitHub [issue](https://github.com/OuhscBbmc/REDCapR/issues); issues are a usually a good place to ask public questions too.  However, feel free to email Will (<[email protected]>).  Please note that this project is released with a [Contributor Code of Conduct](CONDUCT.md); by participating in this project you agree to abide by its terms.  We have some starting material described in the [`./documentation-for-developers/`](https://github.com/OuhscBbmc/REDCapR/tree/master/documentation-for-developers) directory.  
+We encourage input and collaboration.  If you're familiar with GitHub and R packages, feel free to submit a [pull request](https://github.com/OuhscBbmc/REDCapR/pulls).  If you'd like to report a bug or make a suggestion, please create a GitHub [issue](https://github.com/OuhscBbmc/REDCapR/issues); issues are a usually a good place to ask public questions too.  However, feel free to email Will (<[email protected]>).  Please note that this project is released with a [Contributor Code of Conduct](https://github.com/OuhscBbmc/REDCapR/blob/master/CONDUCT.md); by participating in this project you agree to abide by its terms.  We have some starting material described in the [`./documentation-for-developers/`](https://github.com/OuhscBbmc/REDCapR/tree/master/documentation-for-developers) directory.  
 
 We'd like to thank the following developers for their [advice](https://github.com/OuhscBbmc/REDCapR/issues?q=is%3Aissue+is%3Aclosed) and [code contributions](https://github.com/OuhscBbmc/REDCapR/graphs/contributors): [Benjamin Nutter](https://github.com/nutterb), [Rollie Parrish](https://github.com/rparrish), [Scott Burns](https://github.com/sburns), [John Aponte](https://github.com/johnaponte), [Andrew Peters](https://github.com/ARPeters), and [Hao Zhu](https://github.com/haozhu233).
 

diff --git a/cran-comments.md b/cran-comments.md
@@ -2,32 +2,33 @@ Description
 -----------------------------------------------
 This submission includes new features and also addresses some (soon-to-be) breaking changes in the libraries underneath.
 
+I have fixed the three points described in your previous response (documented in [our issue](https://github.com/OuhscBbmc/REDCapR/issues/253)).  For the first point, I fixed some markdown syntax so  the API's url is correctly interpreted.  I'm sorry the test builds below didn't uncover the last two.
+
 Thank you for taking the time to review my submission, and please tell me if there's something else I should do for CRAN.  -Will Beasley
 
 
 Test environments
 -----------------------------------------------
 
-The win-builder and a local machine have used the CRAN version of dplyr.  The others have used the current GitHub master version of dplyr.
-
-* Local Ubuntu, R 3.6.1 patched
-* Local Win8, R 3.6.1 patched
-* [r-hub](https://builder.r-hub.io/status/REDCapR_0.10.1.tar.gz-b2178285b2ac4196bce254c553eaab50)
-    * Ubuntu Linux 16.04 LTS, R-release, GCC
-    * Fedora Linux, R-devel, clang, gfortran
-* [win-builder](https://win-builder.r-project.org/3wAMI67afYVu/), development version.
-* [Travis CI](https://travis-ci.org/OuhscBbmc/REDCapR), Ubuntu 14.04 LTS
-* [AppVeyor](https://ci.appveyor.com/project/wibeasley/REDCapR), Windows Server 2012
+1. Local Ubuntu, R 3.6.1 patched
+1. Local Win8, R 3.6.1 patched
+1. r-hub
+    1. [Ubuntu Linux 16.04 LTS, R-release, GCC](https://builder.r-hub.io/status/REDCapR_0.10.1.tar.gz-ffc36a958fe44f3fb3263929670f8138)
+    1. [Fedora Linux, R-devel, clang, gfortran](https://builder.r-hub.io/status/REDCapR_0.10.1.tar.gz-2e2bed0d3cda44429a8f830c2b9d8e92)
+    1. [Windows Server](https://builder.r-hub.io/status/REDCapR_0.10.1.tar.gz-0c79ee0f9b3e49f7b381348e9f7283b0)
+1. [win-builder](https://win-builder.r-project.org/a9ub2IBAb24W), development version.
+1. [Travis CI](https://travis-ci.org/OuhscBbmc/REDCapR), Ubuntu 14.04 LTS
+1. [AppVeyor](https://ci.appveyor.com/project/wibeasley/REDCapR), Windows Server 2012
 
 
 R CMD check results
 -----------------------------------------------
 
-* No ERRORs or WARNINGs on any builds.
-* There is one NOTE related to the url `https://bbmc.ouhsc.edu/redcap/api/`.  This url is the root of the API, and not intended to be navigated to by humans.
+* No ERRORs, WARNINGs, or NOTEs on any builds.
 
 
 Downstream dependencies
 -----------------------------------------------
 
-No other packages depend/import this one.
+No downstream pakcages are affecteed.  Only one package depends/imports REDCapR, and it passes my local checks.
+    * [codified](https://CRAN.R-project.org/package=codified)
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