Commits

Branch selector

 devel

User selector

All users

Datepicker

All time

Commit History

Commits on Sep 30, 2025

• v1.13.3 -- list Nick as the maintainer

  lcolladotor

  committed
  3cab57c

  Copy full SHA for 3cab57c

Commits on Sep 26, 2025

• Fix a test that broke with ggplot2 4.0.0 and bump version

  Nick-Eagles

  committed
  dd707d4

  Copy full SHA for dd707d4

Commits on Jul 28, 2025

• qsvaR 1.13.1

  Show description for 4a4cf8e
  hpages

  committed
  4a4cf8e

  Copy full SHA for 4a4cf8e

Commits on Apr 15, 2025

• bump x.y.z version to odd y following creation of RELEASE_3_21 branch

  jwokaty

  committed
  d679ecb

  Copy full SHA for d679ecb

• bump x.y.z version to even y prior to creation of RELEASE_3_21 branch

  jwokaty

  committed
  2dffda2

  Copy full SHA for 2dffda2

Commits on Dec 10, 2024

• v1.11.1 -- forgot to match bumped version on GitHub

  lcolladotor

  committed
  55f8513

  Copy full SHA for 55f8513

• Update GHA for bioc 3.20

  lcolladotor

  committed
  db327a3

  Copy full SHA for db327a3

• Fix GHA badge

  lcolladotor

  committed
  a486c9e

  Copy full SHA for a486c9e

• Fix DESCRIPTION file

  lcolladotor

  committed
  ed5b69a

  Copy full SHA for ed5b69a

Commits on Nov 27, 2024

• Update README to the new way of selecting transcripts

  Nick-Eagles

  committed
  8fd453a

  Copy full SHA for 8fd453a

Commits on Nov 26, 2024

• Fix a syntax error in an example

  Nick-Eagles

  committed
  d93912b

  Copy full SHA for d93912b

• Fix another unnecessary reference to tidyverse

  Nick-Eagles

  committed
  bd53870

  Copy full SHA for bd53870

• Fix accidental reliance on tidyverse package

  Nick-Eagles

  committed
  8e36dd9

  Copy full SHA for 8e36dd9

• Add myself as an author, update package date, and change tidyverse dependency to dplyr specifically

  Nick-Eagles

  committed
  d9bfdd4

  Copy full SHA for d9bfdd4

• Fix tests after interactive debugging

  Nick-Eagles

  committed
  57317e9

  Copy full SHA for 57317e9

• Fix vignette to reflect changes to 'select_transcripts()' and related functions

  Nick-Eagles

  committed
  19149ab

  Copy full SHA for 19149ab

• Fix tests to reflect changes to 'select_transcripts()' and related functions

  Nick-Eagles

  committed
  78fe432

  Copy full SHA for 78fe432

• Remove redundant use of parameters in getDegTx (meant to be included a couple commits ago)

  Nick-Eagles

  committed
  73f3011

  Copy full SHA for 73f3011

• Overhaul 'select_transcripts' to allow selecting a custom number of transcripts with or without models including cell-type proportion

  Nick-Eagles

  committed
  fed7732

  Copy full SHA for fed7732

• Simplify functions which use both 'type' and 'sig_transcripts' parameters, which are redundant. In preparation also for making 'select_transcripts()' more flexible

  Nick-Eagles

  committed
  9e7f8c1

  Copy full SHA for 9e7f8c1

• Provide more transcripts and data from the degradation models, in preparation for changes to select_transcripts allowing more customization from the user

  Nick-Eagles

  committed
  5943f07

  Copy full SHA for 5943f07

Commits on Nov 5, 2024

• Rename 'standard' to 'top1000' for clarity and consistency with 'top1500'

  Nick-Eagles

  committed
  088ce27

  Copy full SHA for 088ce27

• Auto-style code

  Nick-Eagles

  committed
  cd8facb

  Copy full SHA for cd8facb

• Clarify the cell component model again

  Nick-Eagles

  committed
  992b450

  Copy full SHA for 992b450

• Use 80-character lines and clarify the cell component model

  Nick-Eagles

  committed
  9d2f6f1

  Copy full SHA for 9d2f6f1

• Use up-to-date code to generate the list of degradation-associated transcripts. The previous set was old, disagreed with current results, and didn't have a record of where it came from in https://g…

  Show description for 3c7cc05
  Nick-Eagles

  committed
  3c7cc05

  Copy full SHA for 3c7cc05

Commits on Oct 29, 2024

• bump x.y.z version to odd y following creation of RELEASE_3_20 branch

  jwokaty

  committed
  4754d53

  Copy full SHA for 4754d53

• bump x.y.z version to even y prior to creation of RELEASE_3_20 branch

  jwokaty

  committed
  f86c9fd

  Copy full SHA for f86c9fd

Commits on Oct 9, 2024

• Merge pull request #45 from LieberInstitute/gdev

  Show description for 7a3ec1b
  Nick-Eagles

  authored
  7a3ec1b

  Copy full SHA for 7a3ec1b

Commits on Sep 26, 2024

• reversed workflow changes

  gpertea

  committed
  fd68d34

  Copy full SHA for fd68d34

Commits on Sep 24, 2024

• fixed docs typo

  gpertea

  committed
  5cb690d

  Copy full SHA for 5cb690d

• added back the generated documentation, the build system is not that smart

  gpertea

  committed
  ddbe0fc

  Copy full SHA for ddbe0fc

• fix code paste error

  gpertea

  committed
  03d6beb

  Copy full SHA for 03d6beb

• added DEqual option to use custom deg_tstats, other plot options

  gpertea

  committed
  7cdb54c

  Copy full SHA for 7cdb54c

Commits on Sep 22, 2024

• why push also Rd files if roxygen is building them anyway

  gpertea

  committed
  e5f8910

  Copy full SHA for e5f8910

Pagination

Previous

Next