Package: DeLorean

Title: Estimates Pseudotimes for Single Cell Expression Data

Author: John Reid <[email protected]>

Maintainer: John Reid <[email protected]>

Version: 1.5.1

Description: Implements the DeLorean model (Reid & Wernisch (2016)

<doi:10.1093/bioinformatics/btw372>) to estimate pseudotimes for

single cell expression data. The DeLorean model uses a Gaussian process

latent variable model to model uncertainty in the capture time of

cross-sectional data.

Depends:

methods,

R (>= 3.4.0),

Rcpp (>= 0.12.19)

Imports:

rstan (>= 2.18.1),

rstantools (>= 1.5.1),

RcppParallel (>= 5.0.1),

dplyr (>= 0.4.3),

reshape2 (>= 1.4),

stringr (>= 0.6.2),

ggplot2 (>= 1.0.0),

MASS (>= 7.3),

broom,

coda,

parallel,

functional,

kernlab,

fastICA,

seriation,

lattice,

memoise

LinkingTo:

BH (>= 1.66.0-1),

Rcpp (>= 0.12.19),

RcppEigen (>= 0.3.3.4.0),

RcppParallel (>= 5.0.1),

rstan (>= 2.18.1),

StanHeaders (>= 2.18.0)

Suggests:

knitr (>= 1.8),

knitcitations,

rmarkdown,

formatR,

extrafont,

testthat,

svglite,

VGAM

Encoding: UTF-8

LazyData: true

NeedsCompilation: yes

SystemRequirements: GNU make

RoxygenNote: 7.1.1

License: MIT + file LICENSE

VignetteBuilder: knitr