<!-- DocSum DTD for assembly database -->

<!--~~ !dtd

~~json

<json type='esummary' version='0.3'>

<config lcnames='true'/>

</json>

~~-->

<!ENTITY % T_string "(#PCDATA)">

<!ENTITY % T_int "(#PCDATA)">

<!-- Members definition of Structure type: T_Bioproj -->

<!ELEMENT BioprojectAccn %T_string;>

<!--~~ <BioprojectId>

~~json <number/>

~~-->

<!ELEMENT BioprojectId %T_int;>

<!-- Definition of Structure type: T_Bioproj -->

<!--~~ <Bioproj>

~~json <object/>

~~-->

<!ENTITY % T_Bioproj "(

BioprojectAccn?,

BioprojectId?

)

">

<!-- Definition of List type: T_BioProjList -->

<!ELEMENT Bioproj %T_Bioproj;>

<!ENTITY % T_BioProjList "(Bioproj)*">

<!-- Definition of List type: T_IntList -->

<!ELEMENT int %T_int;>

<!ENTITY % T_IntList "(int)*">

<!-- Members definition of Structure type: T_Infraspecie -->

<!ELEMENT Sub_type %T_string;>

<!ELEMENT Sub_value %T_string;>

<!-- Definition of Structure type: T_Infraspecie -->

<!--~~ <Infraspecie>

~~json <object/>

~~-->

<!ENTITY % T_Infraspecie "(

Sub_type?,

Sub_value?

)

">

<!-- Definition of List type: T_InfraspeciesList -->

<!ELEMENT Infraspecie %T_Infraspecie;>

<!ENTITY % T_InfraspeciesList "(Infraspecie)*">

<!-- Members definition of Structure type: T_BiosourceStruct -->

<!ELEMENT InfraspeciesList %T_InfraspeciesList;>

<!ELEMENT Sex %T_string;>

<!ELEMENT Isolate %T_string;>

<!-- Definition of Structure type: T_BiosourceStruct -->

<!--~~ <BiosourceStruct>

~~json <object/>

~~-->

<!ENTITY % T_BiosourceStruct "(

InfraspeciesList?,

Sex?,

Isolate?

)

">

<!ENTITY % T_date "(#PCDATA)">

<!-- Members definition of Structure type: T_Anomalous -->

<!ELEMENT Property %T_string;>

<!ELEMENT Pubmed %T_string;>

<!-- Definition of Structure type: T_Anomalous -->

<!--~~ <Anomalous>

~~json <object/>

~~-->

<!ENTITY % T_Anomalous "(

Property?,

Pubmed?

)

">

<!-- Definition of List type: T_AnomalousListT -->

<!ELEMENT Anomalous %T_Anomalous;>

<!ENTITY % T_AnomalousListT "(Anomalous)*">

<!-- Definition of List type: T_StrList -->

<!ELEMENT string %T_string;>

<!ENTITY % T_StrList "(string)*">

<!-- Members definition of Structure type: T_SynStruct -->

<!ELEMENT Genbank %T_string;>

<!ELEMENT RefSeq %T_string;>

<!ELEMENT Similarity %T_string;>

<!-- Definition of Structure type: T_SynStruct -->

<!--~~ <SynStruct>

~~json <object/>

~~-->

<!ENTITY % T_SynStruct "(

Genbank?,

RefSeq?,

Similarity?

)

">

<!-- Members definition of Structure type: T_BuscoT -->

<!ELEMENT RefSeqAnnotationRelease %T_string;>

<!ELEMENT BuscoLineage %T_string;>

<!ELEMENT BuscoVer %T_string;>

<!ELEMENT Complete %T_string;>

<!ELEMENT SingleCopy %T_string;>

<!ELEMENT Duplicated %T_string;>

<!ELEMENT Fragmented %T_string;>

<!ELEMENT Missing %T_string;>

<!--~~ <TotalCount>

~~json <number/>

~~-->

<!ELEMENT TotalCount %T_int;>

<!-- Definition of Structure type: T_BuscoT -->

<!--~~ <BuscoT>

~~json <object/>

~~-->

<!ENTITY % T_BuscoT "(

RefSeqAnnotationRelease?,

BuscoLineage?,

BuscoVer?,

Complete?,

SingleCopy?,

Duplicated?,

Fragmented?,

Missing?,

TotalCount?

)

">

<!ENTITY % T_xml "(#PCDATA)">

<!-- Members definition of Structure type: T_DocSum -->

<!ELEMENT RsUid %T_string;>

<!ELEMENT GbUid %T_string;>

<!ELEMENT AssemblyAccession %T_string;>

<!ELEMENT LastMajorReleaseAccession %T_string;>

<!ELEMENT LatestAccession %T_string;>

<!ELEMENT ChainId %T_string;>

<!ELEMENT AssemblyName %T_string;>

<!ELEMENT UCSCName %T_string;>

<!ELEMENT EnsemblName %T_string;>

<!ELEMENT Taxid %T_string;>

<!ELEMENT Organism %T_string;>

<!ELEMENT SpeciesTaxid %T_string;>

<!ELEMENT SpeciesName %T_string;>

<!ELEMENT AssemblyType %T_string;>

<!ELEMENT AssemblyClass %T_string;>

<!ELEMENT AssemblyStatus %T_string;>

<!--~~ <AssemblyStatusSort>

~~json <number/>

~~-->

<!ELEMENT AssemblyStatusSort %T_int;>

<!ELEMENT WGS %T_string;>

<!ELEMENT GB_BioProjects %T_BioProjList;>

<!ELEMENT GB_Projects %T_IntList;>

<!ELEMENT RS_BioProjects %T_BioProjList;>

<!ELEMENT RS_Projects %T_IntList;>

<!ELEMENT BioSampleAccn %T_string;>

<!ELEMENT BioSampleId %T_string;>

<!ELEMENT Biosource %T_BiosourceStruct;>

<!ELEMENT Coverage %T_string;>

<!ELEMENT PartialGenomeRepresentation %T_string;>

<!ELEMENT Primary %T_string;>

<!ELEMENT AssemblyDescription %T_string;>

<!ELEMENT ReleaseLevel %T_string;>

<!ELEMENT ReleaseType %T_string;>

<!ELEMENT AsmReleaseDate_GenBank %T_date;>

<!ELEMENT AsmReleaseDate_RefSeq %T_date;>

<!ELEMENT SeqReleaseDate %T_date;>

<!ELEMENT AsmUpdateDate %T_date;>

<!ELEMENT SubmissionDate %T_date;>

<!ELEMENT LastUpdateDate %T_date;>

<!ELEMENT SubmitterOrganization %T_string;>

<!ELEMENT RefSeq_category %T_string;>

<!ELEMENT AnomalousList %T_AnomalousListT;>

<!ELEMENT ExclFromRefSeq %T_StrList;>

<!ELEMENT PropertyList %T_StrList;>

<!ELEMENT FromType %T_string;>

<!ELEMENT Synonym %T_SynStruct;>

<!--~~ <ContigN50>

~~json <number/>

~~-->

<!ELEMENT ContigN50 %T_int;>

<!--~~ <ScaffoldN50>

~~json <number/>

~~-->

<!ELEMENT ScaffoldN50 %T_int;>

<!ELEMENT FtpPath_GenBank %T_string;>

<!ELEMENT FtpPath_RefSeq %T_string;>

<!ELEMENT FtpPath_Assembly_rpt %T_string;>

<!ELEMENT FtpPath_Stats_rpt %T_string;>

<!ELEMENT FtpPath_Regions_rpt %T_string;>

<!ELEMENT Busco %T_BuscoT;>

<!ELEMENT SortOrder %T_string;>

<!ELEMENT Meta %T_xml;>

<!ELEMENT error %T_string;>

<!-- Definition of Structure type: T_DocSum -->

<!--~~ <DocumentSummary>

~~json <object name='@uid'/>

~~-->

<!ENTITY % T_DocSum "((

RsUid?,

GbUid?,

AssemblyAccession?,

LastMajorReleaseAccession?,

LatestAccession?,

ChainId?,

AssemblyName?,

UCSCName?,

EnsemblName?,

Taxid?,

Organism?,

SpeciesTaxid?,

SpeciesName?,

AssemblyType?,

AssemblyClass?,

AssemblyStatus?,

AssemblyStatusSort?,

WGS?,

GB_BioProjects?,

GB_Projects?,

RS_BioProjects?,

RS_Projects?,

BioSampleAccn?,

BioSampleId?,

Biosource?,

Coverage?,

PartialGenomeRepresentation?,

Primary?,

AssemblyDescription?,

ReleaseLevel?,

ReleaseType?,

AsmReleaseDate_GenBank?,

AsmReleaseDate_RefSeq?,

SeqReleaseDate?,

AsmUpdateDate?,

SubmissionDate?,

LastUpdateDate?,

SubmitterOrganization?,

RefSeq_category?,

AnomalousList?,

ExclFromRefSeq?,

PropertyList?,

FromType?,

Synonym?,

ContigN50?,

ScaffoldN50?,

FtpPath_GenBank?,

FtpPath_RefSeq?,

FtpPath_Assembly_rpt?,

FtpPath_Stats_rpt?,

FtpPath_Regions_rpt?,

Busco?,

SortOrder?,

Meta?

)

| error)

">

<!ELEMENT DocumentSummary %T_DocSum;>

<!ATTLIST DocumentSummary uid CDATA #IMPLIED>

<!ELEMENT DbBuild %T_string;>

<!ELEMENT DocumentSummarySet (DbBuild?, DocumentSummary*)>

<!ATTLIST DocumentSummarySet status CDATA #REQUIRED>

<!--~~ <DocumentSummarySet>

~~json

<object key="result">

<array key="uids" select='DocumentSummary/@uid'/>

<members select='DocumentSummary'/>

</object>

~~-->

<!--~~ <eSummaryResult>

~~ json <member/>

~~-->

<!ELEMENT eSummaryResult (DocumentSummarySet?)>