TODO:
| tmp_name_en_source | n |
|---|---|
| Traslator | 415 |
Source table with added translation has been formatted to be similar to OMOP in 1_source_vocabulary/spat_for_source_vocabulary.csv.
From 415 codes 0 have been approved.
This makes 0% of codes approved.
How many codes labeled as SPAT in finngen are not in the atc standard?
There are 9 codes not found in the standard
Top10 sorted by freq:
| concept_code | freq | freq_per |
|---|---|---|
| -1 | 847 | 0.014% |
| -2 | 52 | 0.001% |
| XLD00 | 26 | 0.000% |
| WW200 | 14 | 0.000% |
| OAA11 | 8 | 0.000% |
| OAB30 | 8 | 0.000% |
| JFA15 | 7 | 0.000% |
| OAB47 | 7 | 0.000% |
| OAA70 | 6 | 0.000% |
The full list can be found in ./3_freq_of_source_codes/finngen_not_in_SPAT.csv
Status of the SPAT codes infinngen
| status | n_codes | per_codes | n_events | per_events |
|---|---|---|---|---|
| not_mapped | 323 | 97.289% | 6112598 | 99.984% |
| not_found | 9 | 2.711% | 975 | 0.016% |