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base repository: FDA-ARGOS/data.argosdb
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base: v0.6
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head repository: FDA-ARGOS/data.argosdb
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compare: v0.7
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  • 8 commits
  • 45 files changed
  • 3 contributors

Commits on Jun 7, 2022

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    be0e967 View commit details
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  2. Merge pull request #69 from FDA-ARGOS/ngsDG_68

    Fixes #68; adds login success check and clean up TEMPIDFile.csv
    kee007ney authored Jun 7, 2022
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Commits on Jun 8, 2022

  1. Add data_sheet_validator and test files

    Changes to be committed:
    	modified:   data_files/SRA_ngsQCTEST.tsv
    	deleted:    data_files/test_SRA_ngsQC.tsv
    	new file:   lib/data_sheet_validator.py
    HadleyKing committed Jun 8, 2022
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  2. Add test files and test results

    Changes to be committed:
    	new file:   tests/test_files/SRA_assemblyQC.tsv
    	new file:   tests/test_files/SRA_biosample.tsv
    	new file:   tests/test_files/SRA_ngsQC.tsv
    	new file:   tests/test_files/assemblyQC_HL.tsv
    	new file:   tests/test_files/biosampleMeta_HL.tsv
    	new file:   tests/test_files/ngsQC_Crandall.tsv
    	new file:   tests/test_files/ngs_id_list.tsv
    	new file:   tests/test_files/sars-cov-2_lineage_mutations.tsv
    	new file:   tests/test_files/siteQC_HL.tsv
    	new file:   tests/test_files/uniprot-proteome_UP000464024.csv
    	new file:   tests/test_results/SRA_assemblyQC.json
    	new file:   tests/test_results/SRA_biosample.json
    	new file:   tests/test_results/SRA_ngsQC.json
    	new file:   tests/test_results/assemblyQC.json
    	new file:   tests/test_results/biosampleMeta_HL.json
    	new file:   tests/test_results/ngsQC_Crandall.json
    	new file:   tests/test_results/ngs_ID_list.json
    	new file:   tests/test_results/sars-cov-2_lineage_mutations.json
    	new file:   tests/test_results/siteQC_HL.json
    	new file:   tests/test_results/uniprot-proteome_UP000464024.json
    HadleyKing committed Jun 8, 2022
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  3. Updated programs for v0.7 release

    Changes to be committed:
    	new file:   lib/__init__.py
    	modified:   lib/csv2json.py
    	modified:   lib/data_sheet_validator.py
    	modified:   lib/dict_release_notes.py
    	modified:   lib/dictionary_utils.py
    	modified:   lib/headers.py
    	new file:   lib/write_schema.py
    HadleyKing committed Jun 8, 2022
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  4. New data dictionary and release notes

    Changes to be committed:
    	new file:   data_dictionary/v0.7/README.tsv
    	new file:   data_dictionary/v0.7/core_property_list.tsv
    	new file:   data_dictionary/v0.7/non_core_property_list.tsv
    	new file:   data_dictionary/v0.7/property_definition.tsv
    	new file:   data_dictionary/v0.7/release_notes.tsv
    	new file:   data_dictionary/v0.7/release_notes.txt
    HadleyKing committed Jun 8, 2022
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  5. New schemas

    Changes to be committed:
    	new file:   schema/v0.7/core/assemblyQC.json
    	new file:   schema/v0.7/core/biosampleMeta.json
    	new file:   schema/v0.7/core/ngsQC.json
    	new file:   schema/v0.7/core/siteQC.json
    	new file:   schema/v0.7/non-core/SRA_assemblyQC.json
    	new file:   schema/v0.7/non-core/SRA_biosample.json
    	new file:   schema/v0.7/non-core/SRA_ngsQC.json
    	new file:   schema/v0.7/non-core/ngs_ID_list.json
    	new file:   schema/v0.7/non-core/sars-cov-2_lineage_mutations.json
    	new file:   schema/v0.7/non-core/uniprot-proteome_*.json
    HadleyKing committed Jun 8, 2022
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  6. Remove release_notes.txt

    Changes to be committed:
    	deleted:    data_dictionary/v0.7/release_notes.txt
    HadleyKing committed Jun 8, 2022
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