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base repository: FDA-ARGOS/data.argosdb
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base: v0.6
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head repository: FDA-ARGOS/data.argosdb
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compare: v0.7
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- 8 commits
- 45 files changed
- 3 contributors
Commits on Jun 7, 2022
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Merge pull request #69 from FDA-ARGOS/ngsDG_68
Fixes #68; adds login success check and clean up TEMPIDFile.csv
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Commits on Jun 8, 2022
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Add data_sheet_validator and test files
Changes to be committed: modified: data_files/SRA_ngsQCTEST.tsv deleted: data_files/test_SRA_ngsQC.tsv new file: lib/data_sheet_validator.py
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Add test files and test results
Changes to be committed: new file: tests/test_files/SRA_assemblyQC.tsv new file: tests/test_files/SRA_biosample.tsv new file: tests/test_files/SRA_ngsQC.tsv new file: tests/test_files/assemblyQC_HL.tsv new file: tests/test_files/biosampleMeta_HL.tsv new file: tests/test_files/ngsQC_Crandall.tsv new file: tests/test_files/ngs_id_list.tsv new file: tests/test_files/sars-cov-2_lineage_mutations.tsv new file: tests/test_files/siteQC_HL.tsv new file: tests/test_files/uniprot-proteome_UP000464024.csv new file: tests/test_results/SRA_assemblyQC.json new file: tests/test_results/SRA_biosample.json new file: tests/test_results/SRA_ngsQC.json new file: tests/test_results/assemblyQC.json new file: tests/test_results/biosampleMeta_HL.json new file: tests/test_results/ngsQC_Crandall.json new file: tests/test_results/ngs_ID_list.json new file: tests/test_results/sars-cov-2_lineage_mutations.json new file: tests/test_results/siteQC_HL.json new file: tests/test_results/uniprot-proteome_UP000464024.json
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Updated programs for v0.7 release
Changes to be committed: new file: lib/__init__.py modified: lib/csv2json.py modified: lib/data_sheet_validator.py modified: lib/dict_release_notes.py modified: lib/dictionary_utils.py modified: lib/headers.py new file: lib/write_schema.py
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New data dictionary and release notes
Changes to be committed: new file: data_dictionary/v0.7/README.tsv new file: data_dictionary/v0.7/core_property_list.tsv new file: data_dictionary/v0.7/non_core_property_list.tsv new file: data_dictionary/v0.7/property_definition.tsv new file: data_dictionary/v0.7/release_notes.tsv new file: data_dictionary/v0.7/release_notes.txt
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Changes to be committed: new file: schema/v0.7/core/assemblyQC.json new file: schema/v0.7/core/biosampleMeta.json new file: schema/v0.7/core/ngsQC.json new file: schema/v0.7/core/siteQC.json new file: schema/v0.7/non-core/SRA_assemblyQC.json new file: schema/v0.7/non-core/SRA_biosample.json new file: schema/v0.7/non-core/SRA_ngsQC.json new file: schema/v0.7/non-core/ngs_ID_list.json new file: schema/v0.7/non-core/sars-cov-2_lineage_mutations.json new file: schema/v0.7/non-core/uniprot-proteome_*.json
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Changes to be committed: deleted: data_dictionary/v0.7/release_notes.txt
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