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Using an older version revision of D2D
Older revisions can be downloaded from github and used "by hand".
In addition, D2D offers functionality for using older revisions. This might be useful for testing whether an error also occurs for older code versions. The old revisions are referred to by the commit-ID (also termed SHA or sha-hash value). These commit-IDs are hexadecimal strings. They occur on github in long and short versions. Click on "commit" for selecting a specific commit version and selecting the corresponding ID.
Downloading of the old version. The paths have to be set to the download folder by hand.
Evaluating a specific command using an old version. This function can be used to compare the outcome of several versions. Download and setting of paths are done automatically.
Fitting with an old revision version.
sha = '9ad8de7e82190b8cf4e61e61fa8cef5a257b4a06'; % the old commit
revision_path = arGetOldRevision(sha)
addpath([revision_path,filesep,'d2d-',sha,filesep,'arFramework3'])
which arInit % check whether the path is set properly
- Installation and system requirements
- Setting up models
- First steps
- Advanced events and pre-equilibration
- Computation of integration-based prediction bands
- How is the architecture of the code and the most important commands?
- What are the most important fields of the global variable ar?
- What are the most important functions?
- Optimization algorithms available in the d2d-framework
- Objective function, likelhood and chi-square in the d2d framework
- How to set up priors?
- How to set up steady state constraints?
- How do I restart the solver upon a step input?
- How to deal with integrator tolerances?
- How to implement a bolus injection?
- How to implement washing and an injection?
- How to implement a moment ODE model?
- How to run PLE calculations on a Cluster?