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Commits on Sep 7, 2022

• Update requirements.txt

  DanDiDanD

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Commits on Aug 31, 2022

• Make using GPU in relaxation optional, with default not to use.

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  Htomlinson14

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  copybara-github

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  2eb6c0c

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Commits on Aug 25, 2022

• Bump the version to 2.2.3.

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  Augustin-Zidek

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  copybara-github

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  86a0b8e

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• Pin Conda version to 4.13.0.

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  Augustin-Zidek

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  copybara-github

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  dad1f28

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Commits on Aug 12, 2022

• Changed PAE json output to new format that matches the format used in AFDB.

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  DeepMind

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  copybara-github

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  6f6e8c2

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Commits on Jul 28, 2022

• Internal change

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  Augustin-Zidek

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  copybara-github

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  22fc0ee

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• Add a readme file for the AlphaFold Protein Structure Database.

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  Augustin-Zidek

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  copybara-github

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  efc5fb8

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Commits on Jun 20, 2022

• Fix Dockerfile breakage due to jax-ml/jax#11142.

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  Tim Green

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  copybara-github

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  624a449

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Commits on Jun 14, 2022

• Migrate from collections.Iterable to collections.abc.Iterable.

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  tomwardio

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  copybara-github

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  7b2a4c5

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• Remove unneeded __init__.py

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  tomwardio

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  copybara-github

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  253d1fe

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• Add matplotlib test dependency so we can run notebook_utils_test.

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  tomwardio

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  copybara-github

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  725e79a

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• Move disable_v2_behaviour() to setUp to enable running tests in test suites.

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  tomwardio

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  copybara-github

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  5f4a9cc

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• Remove unused type hint from run_alphafold script.

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  tomwardio

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  copybara-github

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  157c0ea

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Commits on Jun 13, 2022

• Bump AlphaFold version to v2.2.2.

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  Augustin-Zidek

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  copybara-github

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  b0b7afa

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• Replace period with hyphens in place, instead of declaring environment variable.

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  tomwardio

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  copybara-github

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  ab10514

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• Bump AlphaFold version to 2.2.1.

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  Augustin-Zidek

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  copybara-github

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  623cc11

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• Pin protobuf version to 3.20.1.

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  Augustin-Zidek

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  copybara-github

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  0f7ab13

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Commits on Jun 7, 2022

• Clarify that AlphaFold works only under Linux.

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  Augustin-Zidek

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  copybara-github

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  c9a9e87

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Commits on May 31, 2022

• Add support for CUDA patch versions.

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  tomwardio

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  copybara-github

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  55c948c

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• Fix jax.tree_multimap deprecation warning.

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  Augustin-Zidek

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  copybara-github

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  d9e5e1d

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Commits on May 25, 2022

• Fix AlphaFold version in setup.py.

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  Augustin-Zidek

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  copybara-github

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  197bd19

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Commits on May 19, 2022

• Mention the workaround for the Nvidia public key issue in the README.

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  Augustin-Zidek

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  c42a96f

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Commits on Mar 21, 2022

• Silence some pytype errors.

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  rchen152

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  copybara-github

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  ed0886c

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Commits on Mar 17, 2022

• Do not reuse the temporary output directory in run_alphafold_test.

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  Augustin-Zidek

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  copybara-github

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  b85ffe1

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Commits on Mar 16, 2022

• Fix readme wording.

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  Alex Bridgland

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  copybara-github

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  0007c35

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• Add info for getting in touch via email to colab and readme.

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  Alex Bridgland

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  copybara-github

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  8cdec53

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Commits on Mar 8, 2022

• Add instructions for using multimer v1 model weights.

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  sbodenstein

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  copybara-github

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  918434f

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Commits on Mar 7, 2022

• Update open source between_residue_clash_loss to take into account multiple chains.

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  rich12321

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  copybara-github

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  481b8be

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• Update change-log to briefly describe the change in AlphaFold-Multimer models.

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  rich12321

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  copybara-github

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  3e046ad

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Commits on Mar 3, 2022

• Update multimer models to v2.

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  sbodenstein

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  copybara-github

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  eba82a6

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Commits on Mar 2, 2022

• Remove unused function casp_model_names.

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  sbodenstein

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  copybara-github

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  189f7d8

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• No longer use runtime=nvidia to expose GPUs to the container.

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  tomwardio

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  copybara-github

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  5f37a5a

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Commits on Feb 23, 2022

• Simplify mounting of files.

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  andycowie

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  copybara-github

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  552586e

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Commits on Feb 21, 2022

• Remove unused bias arg in GlobalAttention.

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  Tim Green

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  copybara-github

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  16bab4d

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Commits on Feb 18, 2022

• Remove prokaryotic pairing from AFOS.

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  rich12321

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  copybara-github

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  89a6875

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