16-bit,ij.plugin.Converter("16-bit")

2D Histogram,util.Histogram_2D

2D Stitching,Stitching_2D

3-3-2 RGB,ij.plugin.LutLoader("3-3-2 RGB")

32-bit,ij.plugin.Converter("32-bit")

3D Objects Counter,_3D_objects_counter

3D OC Options,_3D_OC_Options

3D Project...,ij.plugin.Projector

3D Stitching,Stitching_3D

3D Surface Plot,Interactive_3D_Surface_Plot

3D Viewer,ij3d.ImageJ_3D_Viewer

8-bit,ij.plugin.Converter("8-bit")

8-bit Color,ij.plugin.Converter("8-bit Color")

About bUnwarpJ...,bunwarpj.Credits

About ImageJ...,ij.plugin.AboutBox

About This Submenu...,ij.plugin.SimpleCommands("about")

About TrakEM2...,ini.trakem2.utils.Utils

About...,QuickPALM.Run_MyMacro("About_.txt")

About/Help LSMToolbox,LSM_Toolbox("about")

Abs,ij.plugin.filter.ImageMath("abs")

Add Empty Frame,video2.Add_Empty_Frame

Add Image...,ij.plugin.OverlayCommands("image")

Add Noise,ij.plugin.filter.Filters("add")

Add Popup Split Channels,script:Examples/Add_Popup_Split_Channels.bsh

Add Shortcut by Name... ,ij.plugin.Hotkeys("install2")

Add Shortcut... ,ij.plugin.Hotkeys("install")

Add Slice,ij.plugin.StackEditor("add")

Add Specified Noise...,ij.plugin.filter.Filters("noise")

Add...,ij.plugin.filter.ImageMath("add")

Adelsons Squares,script:File/Open_Samples/Adelsons_Squares.ijm

Advanced Weka Segmentation,trainableSegmentation.Weka_Segmentation

Align Image by line ROI,Align_Image

Amira as TrakEM2...,ini.trakem2.New_Project("amira")

Amira...,AmiraMeshReader_

AmiraMesh ...,AmiraMeshWriter_

AmiraTable ...,AmiraTableWriter_

Anaglyph for Red Cyan glasses,script:Examples/Anaglyph_for_Red_Cyan_glasses.rb

Analyse Particles,QuickPALM.Analyse_Particles

Analyze Line Graph,ij.plugin.filter.LineGraphAnalyzer

Analyze Particles...,ij.plugin.filter.ParticleAnalyzer

Analyze Skeleton (2D/3D),sc.fiji.analyzeSkeleton.AnalyzeSkeleton_

Analyze...,sc.fiji.io.Analyze_Reader

Analyze... ,sc.fiji.io.Analyze_Writer

AND...,ij.plugin.filter.ImageMath("and")

Animated Gif ... ,sc.fiji.io.Gif_Stack_Writer

Animated Gif...,sc.fiji.io.Animated_Gif_Reader

Animation Options...,ij.plugin.Animator("options")

Anisotropic Diffusion 2D,anisotropic_diffusion.Anisotropic_Diffusion_2D

Appearance...,ij.plugin.AppearanceOptions

Apply external transformation,fiji.plugin.Apply_External_Transformation

Apply LUT,ij.plugin.filter.LutApplier

Apply saved SIOX segmentator,siox.Load_Segmentation

Apply Transformations,spim.fiji.plugin.Apply_Transformation

Area to Line,ij.plugin.Selection("toline")

Arrange Channels...,ij.plugin.ChannelArranger

Arrow ,fiji.util.ArrowTool

Arrow Tool...,ij.plugin.ArrowToolOptions

As HDF5,spim.fiji.plugin.resave.Resave_HDF5

As TIFF,spim.fiji.plugin.resave.Resave_TIFF

Attach to Cluster...,edu.utexas.clm.archipelago.Fiji_Archipelago("client")

AuPbSn 40,ij.plugin.URLOpener("AuPbSn40.jpg")

Auto Crop,fiji.selection.Select_Bounding_Box("autocrop")

Auto Crop (guess background color),fiji.selection.Select_Bounding_Box("autoautocrop")

Auto Local Threshold,fiji.threshold.Auto_Local_Threshold

Auto Threshold,fiji.threshold.Auto_Threshold

Average Color,Average_Color

Average Images,vib.Average_Images

AVI...,ij.plugin.AVI_Reader

AVI... ,ij.plugin.filter.AVI_Writer

Balloon,sc.fiji.balloonSegmentation.BalloonSegmentation_

Bandpass Filter...,ij.plugin.filter.FFTFilter

Bat Cochlea Renderings,ij.plugin.URLOpener("bat-cochlea-renderings.zip")

Bat Cochlea Volume,ij.plugin.URLOpener("bat-cochlea-volume.zip")

Bead-based registration,fiji.plugin.Bead_Registration

Benchmark,ij.plugin.Benchmark

Big Warp,bdv.ij.BigWarpImagePlusPlugIn

Big Warp Apply,bdv.ij.ApplyBigwarpPlugin

Big Warp to Displacement field,bdv.ij.BigWarpToDeformationFieldPlugIn

Big Warp XML/HDF5,command:bdv.ij.BigWarpBdvCommand

BigDataViewer...,command:bdv.ij.ImportPlugIn

Bilateral Filter,Bilateral_Filter

Bin...,ij.plugin.Binner

Bio-Formats,loci.plugins.LociImporter("location=[Local machine] windowless=false ")

Bio-Formats (Remote),loci.plugins.LociImporter("location=[Internet]")

Bio-Formats (Windowless),loci.plugins.LociImporter("location=[Local machine] windowless=true ")

Bio-Formats Exporter,loci.plugins.LociExporter("")

Bio-Formats Importer,loci.plugins.LociImporter("location=[Local machine] windowless=false ")

Bio-Formats Macro Extensions,loci.plugins.macro.LociFunctions("")

Bio-Formats Plugins Configuration,loci.plugins.config.LociConfig("")

Bio-Formats Plugins...,loci.plugins.About("")

Bio-Formats Remote Importer,loci.plugins.LociImporter("location=[Internet]")

Bio-Formats Windowless Importer,loci.plugins.LociImporter("location=[Local machine] windowless=true ")

Biorad ...,Biorad_Writer

Biorad...,Biorad_Reader

Bleach Correction,emblcmci.BleachCorrection

blend two images,script:Examples/blend_two_images.clj

Blobs Demo in Ruby,script:Examples/Blobs_Demo_in_Ruby.rb

Blow/Lasso Tool,plugin.Lasso_

Blue,ij.plugin.LutLoader("blue")

BMP...,ij.plugin.filter.Writer("bmp")

Boats,ij.plugin.URLOpener("boats.gif")

Bridge (174K),ij.plugin.URLOpener("bridge.gif")

Browse BigDataServer,command:bdv.ij.BigDataBrowserPlugIn

bUnwarpJ,bunwarpj.bUnwarpJ_

Cache Sample Images ,ij.plugin.URLOpener("cache")

Calculator Plus,Calculator_Plus

Calibrate...,ij.plugin.filter.Calibrator

Calibration Bar...,ij.plugin.CalibrationBar

Canvas Size...,ij.plugin.CanvasResizer

Capture Delayed...,ij.plugin.ScreenGrabber("delay")

Capture Image,ij.plugin.ScreenGrabber("image")

Cardio (RGB DICOM),ij.plugin.URLOpener("cardio.dcm.zip")

Cascade,ij.plugin.WindowOrganizer("cascade")

Cell Colony,ij.plugin.URLOpener("Cell_Colony.jpg")

Cell Counter,sc.fiji.cellCounter.Cell_Counter

celsius to fahrenheit,script:Examples/celsius_to_fahrenheit.clj

Centipede Drawing (45KB),ij.plugin.URLOpener("http://imagej.net/media/centipede-drawing.jpg")

Centipede Mivart (43KB),ij.plugin.URLOpener("http://imagej.net/media/centipede-mivart.png")

Check Required Update Sites,script:Plugins/AutoRun/Check_Required_Update_Sites.js

chess ,script:Examples/chess_.py

Circle Interpolator,sc.fiji.timelapse.Circle_Interpolator

Clear,ij.plugin.filter.Filler("clear")

Clear Outside,ij.plugin.filter.Filler("outside")

Clear Results,ij.plugin.filter.Analyzer("clear")

Close-,ij.plugin.filter.Binary("close")

Clown,ij.plugin.URLOpener("clown.jpg")

Collect Garbage,CollectGarbage_

Coloc 2,sc.fiji.coloc.Coloc_2

Colocalization Test,sc.fiji.coloc.Colocalisation_Test

Colocalization Threshold,sc.fiji.coloc.Colocalisation_Threshold

Colocalize...,command:net.imagej.ops.commands.coloc.Colocalize

Color Balance...,ij.plugin.frame.ContrastAdjuster("balance")

Color Clustering,trainableSegmentation.unsupervised.Color_Clustering

Color Histogram,ColorHistogram_

Color Histogram...,ColorHistogram_("about")

Color Inspector 3D,Color_Inspector_3D

Color Threshold...,ij.plugin.frame.ColorThresholder

Colors...,ij.plugin.Colors

Colour Deconvolution,sc.fiji.colourDeconvolution.Colour_Deconvolution

Combine Profile Stacks,sc.fiji.timelapse.Combine_Profile_Stacks

Combine...,ij.plugin.StackCombiner

Command Launcher BeanShell,script:Examples/Command_Launchers/Command_Launcher_BeanShell.bsh

Command Launcher Clojure,script:Examples/Command_Launchers/Command_Launcher_Clojure.clj

Command Launcher Javascript,script:Examples/Command_Launchers/Command_Launcher_Javascript.js

Command Launcher Python,script:Examples/Command_Launchers/Command_Launcher_Python.py

Command Launcher Ruby,script:Examples/Command_Launchers/Command_Launcher_Ruby.rb

Comparing Lengths,script:File/Open_Samples/Comparing_Lengths.ijm

Compile and Run...,sc.fiji.compat.Compile_and_Run

Compiler...,ij.plugin.Compiler("options")

compose rgb-stacks,script:Examples/compose_rgb-stacks.bsh

Compute Curvatures,Compute_Curvatures

Compute Topography,Compute_Topography

Concatenate...,ij.plugin.Concatenator

Confocal Series,ij.plugin.URLOpener("confocal-series.zip")

Console,command:org.scijava.ui.swing.console.ShowConsole

Conversions...,ij.plugin.Options("conv")

Convert to Mask,ij.plugin.Thresholder("mask")

Convert...,ij.plugin.BatchConverter

Convex Hull,ij.plugin.Selection("hull")

Convolve (3D),process3d.Convolve_3d

Convolve...,ij.plugin.filter.Convolver

Coordinates...,ij.plugin.Coordinates

Copy to System,ij.plugin.Clipboard("scopy")

Correct 3D drift,script:Plugins/Registration/Correct_3D_drift.py

Cover Maker,script:Examples/CoverMaker/Cover_Maker.py

CPU Meter,CPU_Meter

Create Desktop Icon,script:Plugins/Utilities/Create_Desktop_Icon.bsh

Create Mask,ij.plugin.Selection("mask")

Create Selection,ij.plugin.Selection("from")

Crop (3D),stacks.Three_Pane_Crop

CT (16-bit DICOM),ij.plugin.URLOpener("ct.dcm.zip")

Curve Fitting...,ij.plugin.frame.Fitter

Custom Filter...,ij.plugin.filter.FFTCustomFilter

Cyan,ij.plugin.LutLoader("cyan")

DAT EMMENU ...,sc.fiji.io.Open_DAT_EMMENU

Define Bounding Box,spim.fiji.plugin.Define_Bounding_Box

Define Multi-View Dataset,spim.fiji.plugin.Define_Multi_View_Dataset

Deinterleave,DeInterleave_

Delaunay Voronoi,Delaunay_Voronoi

Delayed Snapshot,script:Examples/Delayed_Snapshot.py

Delayed Snapshot Window,script:Examples/Delayed_Snapshot_Window.bsh

Delete Frame,video2.Delete_Frame

Delete Slice,ij.plugin.StackEditor("delete")

Despeckle,ij.plugin.filter.RankFilters("despeckle")

Dev. Resources...,ij.plugin.BrowserLauncher("http://imagej.net/ij/developer/index.html")

DF3 ...,sc.fiji.io.Save_DF3

DF3...,sc.fiji.io.Open_DF3

Dialog Prompt Demo,command:org.scijava.ui.swing.commands.DialogPromptDemo

Dichromacy,Dichromacy_

DICOM...,ij.plugin.Options("dicom")

Dilate,ij.plugin.filter.Binary("dilate")

Dilate (3D),process3d.Dilate_

Directionality,fiji.analyze.directionality.Directionality_

Display LUTs,ij.plugin.SimpleCommands("display")

Display View,spim.fiji.plugin.Display_View

Distance Map,ij.plugin.filter.EDM("edm")

Distance Map to Distance Ridge,sc.fiji.localThickness.Distance_Ridge

Distance Ridge to Local Thickness,sc.fiji.localThickness.Local_Thickness_Parallel

Distance Transform 3D,process3d.Distance_Transform_3D

Distortion Correction,lenscorrection.Distortion_Correction

Distribution...,ij.plugin.Distribution

Divide...,ij.plugin.filter.ImageMath("div")

DM3 Reader...,sc.fiji.io.DM3_Reader

Dot Blot,ij.plugin.URLOpener("Dot_Blot.jpg")

downsample ,script:Examples/downsample_.js

Draw Roi,video2.Draw_Roi

Dump Stack,command:org.scijava.plugins.commands.debug.DumpStack

Duplicate,sc.fiji.i5d.plugin.Duplicate_Image5D("")

Duplicate Frame,video2.Duplicate_Frame

Duplicate Transformations,spim.fiji.plugin.Duplicate_Transformation

Dynamic Reslice,fiji.stacks.Dynamic_Reslice

Dynamic ROI Profiler,script:Analyze/Dynamic_ROI_Profiler.clj

East,ij.plugin.filter.Shadows("east")

Edit LUT As Text,script:Examples/Edit_LUT_As_Text.py

Edit LUT...,ij.plugin.LUT_Editor

Edit...,ij.plugin.Compiler("edit")

Elastic Montaging,mpicbg.ij.plugin.ElasticMontage

Elastic Stack Alignment,mpicbg.ij.plugin.ElasticAlign

Embryos,ij.plugin.URLOpener("embryos.jpg")

Enhance Contrast...,ij.plugin.ContrastEnhancer

Enhance Local Contrast (CLAHE),mpicbg.ij.clahe.PlugIn

Enlarge...,ij.plugin.RoiEnlarger

EPS ...,sc.fiji.io.Export_EPS

Erode,ij.plugin.filter.Binary("erode")

Erode (3D),process3d.Erode_

Exp,ij.plugin.filter.ImageMath("exp")

Export Current Image as XML/HDF5,command:bdv.ij.ExportImagePlusPlugIn

Export Current Image as XML/N5,command:bdv.ij.ExportImagePlusAsN5PlugIn

Export Fused Sequence as XML/HDF5,command:bdv.ij.ExportSpimFusionPlugIn

Export N5,command:org.janelia.saalfeldlab.n5.ij.N5Exporter

Export Spim Sequence as XML/HDF5,command:bdv.ij.ExportSpimSequencePlugIn

Extended Profile Plot,script:Examples/Extended_Profile_Plot.bsh

Extract Images From PDF...,sc.fiji.io.Extract_Images_From_PDF

Extract MOPS Correspondences,MOPS_ExtractPointRoi

Extract SIFT Correspondences,SIFT_ExtractPointRoi

extract stack under arealist,script:Examples/TrakEM2_Example_Scripts/extract_stack_under_arealist.py

Fast FFT (2D/3D),registration3d.Fast_FourierTransform

Fast VirtualStack Opener,QuickPALM.Run_MyMacro("Fast_VirtualStack_Opener.txt")

FD Math...,ij.plugin.FFTMath

FFT,ij.plugin.FFT("fft")

FFT Options...,ij.plugin.FFT("options")

FIB-SEM ...,sc.fiji.io.FIBSEM_Reader

Fiji Cube,script:Examples/Fiji_Cube.ijm

Fiji Logo 3D,script:Examples/Fiji_Logo_3D.js

FilamentDetector,command:sc.fiji.filamentdetector.FilamentDetectorPlugin

Fill Holes,ij.plugin.filter.Binary("fill")

Fill ROI holes,Fill_holes

Find Commands...,ij.plugin.CommandFinder

Find Connected Regions,util.Find_Connected_Regions

Find differences,FindIt_

Find Dimension of Raw Image,script:Examples/Find_Dimension_of_Raw_Image.py

Find Edges,ij.plugin.filter.Filters("edge")

Find Jar For Class,script:Plugins/Utilities/Find_Jar_For_Class.bsh

Find Maxima...,ij.plugin.filter.MaximumFinder

Find Ops...,command:net.imagej.ui.swing.ops.FindOps

Fire,ij.plugin.LutLoader("fire")

First-instar brain (6.3MB),ij.plugin.URLOpener("http://samples.fiji.sc/first-instar-brain.zip")

Fit Circle,ij.plugin.Selection("circle")

Fit Circle to Image,fiji.util.Circle_Fitter

Fit Ellipse,ij.plugin.Selection("ellipse")

Fit Rectangle,ij.plugin.Selection("rect")

Fit Spline,ij.plugin.Selection("spline")

FITS...,ij.plugin.filter.Writer("fits")

Fix Funny Filenames,script:File/Fix_Funny_Filenames.ijm

Flip Horizontally,ij.plugin.filter.Transformer("fliph")

Flip Vertically,ij.plugin.filter.Transformer("flipv")

Flip Z,ij.plugin.StackReverser

Flood Fill(3D),process3d.Flood_Fill

FlowJ,FlowJ_

Fluorescent Cells,ij.plugin.URLOpener("FluorescentCells.zip")

Fly Brain,ij.plugin.URLOpener("flybrain.zip")

Fonts...,ij.plugin.SimpleCommands("fonts")

Fractal Box Count...,ij.plugin.filter.FractalBoxCounter

Frangi Vesselness,command:net.imagej.ops.commands.filter.FrangiVesselness

Fresh Start,ij.plugin.Options("fresh-start")

From ROI Manager,ij.plugin.OverlayCommands("from")

Fuse/Deconvolve Dataset,spim.fiji.plugin.Image_Fusion

Gamma...,ij.plugin.filter.ImageMath("gamma")

Gaussian Blur 3D...,ij.plugin.GaussianBlur3D

Gaussian Blur...,ij.plugin.filter.GaussianBlur

Gaussian Window MSE,mpicbg.ij.plugin.MSEGaussianFlow

Gaussian-based stack focuser,sc.fiji.timelapse.Gaussian_Stack_Focuser

Gel,ij.plugin.URLOpener("gel.gif")

Gel Analyzer Options...,ij.plugin.GelAnalyzer("options")

Geometry to Distance Map,sc.fiji.localThickness.EDT_S1D

Gif...,ij.plugin.filter.Writer("gif")

Gradient (3D),process3d.Gradient_

Graph Cut,graphcut.Graph_Cut

Gray Morphology,GrayMorphology_

Gray Morphology...,GrayMorphology_("about")

Grays,ij.plugin.LutLoader("grays")

Green,ij.plugin.LutLoader("green")

Grid...,ij.plugin.Grid

Grid/Collection stitching,plugin.Stitching_Grid

Grouped Z Project...,ij.plugin.GroupedZProjector

HDF5 (append)...,sc.fiji.hdf5.HDF5_Writer_Vibez("append")

HDF5 (new or replace)...,sc.fiji.hdf5.HDF5_Writer_Vibez("replace")

HDF5...,sc.fiji.hdf5.HDF5_Reader_Vibez

HeLa Cells (48-bit RGB),ij.plugin.URLOpener("hela-cells.zip")

Helmholtz Analysis,Helmholtz_Analysis

Help,ij.plugin.BrowserLauncher("https://docs.openmicroscopy.org/latest/bio-formats/users/index.html")

Help on Menu Item,fiji.help.Context_Help

Hide Overlay,ij.plugin.OverlayCommands("hide")

Home,ij.plugin.SimpleCommands("showdirHome")

Homogenize Ball Radius,script:Examples/TrakEM2_Example_Scripts/Homogenize_Ball_Radius.py

HSB (32-bit),ij.plugin.Converter("HSB (32-bit)")

HSB Stack,ij.plugin.Converter("HSB Stack")

Hyperstack to Stack,ij.plugin.HyperStackConverter("hstostack")

Hyperstack...,ij.plugin.HyperStackMaker

Hypervolume Opener,sc.fiji.i5d.plugin.Hypervolume_Opener("")

Ice,ij.plugin.LutLoader("ice")

Icns ...,sc.fiji.io.Icns_Writer

Icns...,sc.fiji.io.Icns_Reader

ICO ...,sc.fiji.io.ICO_Writer

ICO...,sc.fiji.io.ICO_Reader

IFT (3D),process3d.IFT_

IJ Robot,IJ_Robot

Image,ij.plugin.SimpleCommands("showdirImage")

Image Calculator...,ij.plugin.ImageCalculator

Image Expression Parser,fiji.process.Image_Expression_Parser

Image Expression Parser (Macro),fiji.process.Image_Expression_Parser("macro")

Image Sequence...,ij.plugin.FolderOpener

Image Sequence... ,ij.plugin.StackWriter

Image to Results,ij.plugin.SimpleCommands("itor")

Image to Selection...,ij.plugin.OverlayCommands("image-roi")

Image To Tool Icon,script:Examples/Image_To_Tool_Icon.bsh

Image with Overlay,ij.plugin.URLOpener("ImageWithOverlay.zip")

Image... ,command:io.scif.commands.OpenDataset

Image... ,command:io.scif.commands.SaveDataset

Image5D Extensions,sc.fiji.i5d.plugin.Image5D_Extensions("")

Image5D Stack to RGB,sc.fiji.i5d.plugin.Image5D_Stack_to_RGB("")

Image5D to Stack,sc.fiji.i5d.plugin.Image5D_to_Stack("")

Image5D...,sc.fiji.i5d.plugin.I5D_about("about")

ImageJ,ij.plugin.SimpleCommands("showdirImageJ")

ImageJ Properties,ij.plugin.JavaProperties

ImageJ Website...,ij.plugin.BrowserLauncher

ImageJ2...,command:net.imagej.legacy.ImageJ2Options

Images to Stack,ij.plugin.ImagesToStack

Implicit Interpolate Binary,Implicit_Interpolate_Binary

In [+],ij.plugin.Zoom("in")

Input/Output...,ij.plugin.Options("io")

Insert Stack,video2.Insert_Stack

Insert...,ij.plugin.StackInserter

Inspect Java Objects,fiji.debugging.Object_Inspector

Inspect Objects,command:org.scijava.ui.swing.commands.InspectObjects

Install PlugIn...,sc.fiji.compat.PlugInInstaller

Install...,ij.plugin.MacroInstaller

Integral Block MSE,mpicbg.ij.plugin.MSEBlockFlow

Integral Block PMCC,mpicbg.ij.plugin.PMCCBlockFlow

Interactive Affine,Transform_Affine

Interactive Moving Least Squares,Transform_MovingLeastSquaresMesh

Interactive Perspective,Transform_Perspective

Interactive Rigid,Transform_Rigid

Interactive Similarity,Transform_Similarity

Interactive Stack Rotation,Stack_Rotate

Interactive Thin Plate Spline,Transform_ThinPlateSpline

Interleave,Stack_Interleaver

Internal Clipboard,ij.plugin.Clipboard("show")

Interpolate,ij.plugin.Selection("interpolate")

Inverse FFT,ij.plugin.FFT("inverse")

Invert LUT,ij.plugin.LutLoader("invert")

Invert LUTs,ij.plugin.SimpleCommands("invert")

IPLab Reader...,sc.fiji.io.IPLab_Reader

IsoData Classifier,IsoData_Classifier

Janelia H265 Reader,org.janelia.it.fiji.plugins.h5j.H5j_Reader

JavaScript,ij.plugin.NewPlugin("javascript")

Jpeg...,ij.plugin.filter.Writer("jpeg")

Kalman Stack Filter,Kalman_Filter

Kappa - Curvature Analysis,command:sc.fiji.kappa.KappaPlugin

Koala Binary...,sc.fiji.io.Koala_Bin_Reader

Kuwahara Filter,Kuwahara_Filter

KymographBuilder,command:sc.fiji.kymographBuilder.KymographBuilder

Lab Stack,ij.plugin.Converter("Lab Stack")

Label,ij.plugin.filter.Filler("label")

Label Peaks,ij.plugin.GelAnalyzer("label")

Label...,ij.plugin.filter.StackLabeler

Labels...,ij.plugin.OverlayLabels

Landmark Correspondences,Transform_Roi

Laplace (3D),process3d.Laplace_

Leaf,ij.plugin.URLOpener("leaf.jpg")

Leica SP ...,leica.Leica_SP_Writer

Leica SP...,leica.Leica_SP_Reader

Lena (68K),ij.plugin.URLOpener("lena-std.tif")

Level Sets,levelsets.ij.LevelSet

Line Graph,ij.plugin.URLOpener("LineGraph.jpg")

Line to Area,ij.plugin.Selection("toarea")

Line Width...,ij.plugin.Options("line")

Line Width... ,ij.plugin.frame.LineWidthAdjuster

Linear Gradient,fiji.drawing.Linear_Gradient

Linear Kuwahara,Kuwahara_LinearStructure_Filter_v3

Linear Stack Alignment with SIFT,SIFT_Align

list all threads,script:Examples/list_all_threads.py

List Commands,ij.plugin.Hotkeys("list")

List Elements,ij.plugin.OverlayCommands("list")

List Shortcuts,ij.plugin.CommandLister("shortcuts")

Load a TrackMate file,fiji.plugin.trackmate.LoadTrackMatePlugIn

Load HDF5 File...,sc.fiji.hdf5.HDF5_Reader_Vibez

Load Particles (.tif file - fast),QuickPALM.Load_particles_tableFromImg

Local Thickness (complete process),sc.fiji.localThickness.Local_Thickness_Driver

Log,ij.plugin.filter.ImageMath("log")

LOI Interpolator,sc.fiji.timelapse.LOI_Interpolator

LOI Interpolator Tool,sc.fiji.timelapse.LOI_Interpolator_Tool

Look and Feel...,command:org.scijava.ui.swing.laf.OptionsLookAndFeel

LSM...,LSM_Reader

LSMReader...,LSM_Reader("about")

LSMToolbox...,LSM_Toolbox("about")

LSS16 ...,sc.fiji.io.LSS16_Writer

LSS16...,sc.fiji.io.LSS16_Reader

LUT...,ij.plugin.filter.Writer("lut")

LUT... ,ij.plugin.LutLoader

LUTs,ij.plugin.SimpleCommands("showdirLuts")

M51 Galaxy (16-bits),ij.plugin.URLOpener("m51.zip")

Macro,ij.plugin.NewPlugin("macro")

Macro Functions...,ij.plugin.BrowserLauncher("https://wsr.imagej.net/developer/macro/functions.html")

Macro Tool,ij.plugin.NewPlugin("macro-tool")

Macro...,ij.plugin.filter.ImageMath("macro")

Macro... ,ij.plugin.BatchProcessor

Macros,ij.plugin.SimpleCommands("showdirMacros")

Magenta,ij.plugin.LutLoader("magenta")

Magic Montage Tools,ij.plugin.SimpleCommands("magic")

Main Window [enter],ij.plugin.WindowOrganizer("imagej")

Make Band...,ij.plugin.Selection("band")

Make Binary,ij.plugin.Thresholder

Make Circular Selection...,ij.plugin.CircularRoiMaker

Make Composite,ij.plugin.CompositeConverter

Make Fiji Package,fiji.packaging.Package_Maker

Make Inverse,ij.plugin.Selection("inverse")

Make Montage,sc.fiji.i5d.plugin.Make_Montage("")

Make Montage...,ij.plugin.MontageMaker

Make rectangular selection rounded,fiji.selection.Rounded_Rectangle

Make Screencast,script:File/Make_Screencast.bsh

Make Subset...,ij.plugin.SubstackMaker

Make Substack...,ij.plugin.SubstackMaker

Make Transition,video2.Make_Transition

Malaria Sporozoites (9.2MB),ij.plugin.URLOpener("http://samples.fiji.sc/_malaria_parasites.tif")

Mandelbrot Set,command:net.imagej.plugins.commands.debug.MandelbrotSetImage

Manual landmark selection (3d),plugin.Manual_Landmark_Selection

Manual Threshold...,script:Image/Adjust/Manual_Threshold....js

Manual Tracking,Manual_Tracking

Manual tracking with TrackMate,fiji.plugin.trackmate.ManualTrackingPlugIn

Mask Of Nearby Points,util.Mask_Of_Nearby_Points

Max (3D),process3d.Maximum_

Max...,ij.plugin.filter.ImageMath("max")

Maximize,ij.plugin.Zoom("max")

Maximum (3D),process3d.Maximum_

Maximum 3D...,ij.plugin.Filters3D("max")

Maximum...,ij.plugin.filter.RankFilters("max")

Mean,mpicbg.ij.plugin.Mean

Mean 3D...,ij.plugin.Filters3D("mean")

Mean...,ij.plugin.filter.RankFilters("mean")

Measure AreaLists,script:Examples/TrakEM2_Example_Scripts/Measure_AreaLists.py

Measure Connected Components,command:sc.fiji.labkit.ui.plugin.MeasureConnectedComponents

Measure Overlay,ij.plugin.OverlayCommands("measure")

Measure Stack...,ij.plugin.SimpleCommands("measure")

Measure...,ij.plugin.BatchMeasure

Median,ij.plugin.filter.Binary("median")

Median (3D),process3d.Median_

Median 3D...,ij.plugin.Filters3D("median")

Median...,ij.plugin.filter.RankFilters("median")

Memory & Threads...,sc.fiji.compat.Memory

Merge Channels...,ij.plugin.RGBStackMerge

Merge Cluster Jobs,spim.fiji.plugin.Merge_Cluster_Jobs

MHD/MHA ...,sc.fiji.io.MetaImage_Writer

MHD/MHA compressed ...,sc.fiji.io.MetaImage_CWriter

MHD/MHA...,sc.fiji.io.MetaImage_Reader

Min...,ij.plugin.filter.ImageMath("min")

Minimum (3D),process3d.Minimum_

Minimum 3D...,ij.plugin.Filters3D("min")

Minimum...,ij.plugin.filter.RankFilters("min")

Misc...,ij.plugin.Options("misc")

Mitosis (5D stack),ij.plugin.URLOpener("Spindly-GFP.zip")

Monitor Events...,ij.plugin.EventListener

Monitor Memory...,ij.plugin.frame.MemoryMonitor

Montage to Stack...,ij.plugin.StackMaker

Move Roi,video2.Move_Roi

Moving Least Squares,Moving_Least_Squares

MRC Leginon ...,sc.fiji.io.Open_MRC_Leginon

MRI Stack,ij.plugin.URLOpener("mri-stack.zip")

MTrack2 ,MTrack2_

Multi Kymograph,sc.fiji.multiKymograph.MultipleKymograph_

Multi Overlay,sc.fiji.multiKymograph.MultipleOverlay_

Multi-view deconvolution,fiji.plugin.Multi_View_Deconvolution

Multi-view fusion,fiji.plugin.Multi_View_Fusion

Multiple Image Processor,MultipleImageProcessor

Multiply...,ij.plugin.filter.ImageMath("mul")

Multithreaded Image Processing,script:Examples/Multithreaded_Image_Processing.clj

N5,org.janelia.saalfeldlab.n5.ij.N5Importer

N5 Viewer,org.janelia.saalfeldlab.n5.bdv.N5ViewerPlugin

Name Landmarks and Register,landmarks.Name_Points

NaN Background,ij.plugin.filter.ImageMath("nan")

Neuron (5 channels),ij.plugin.URLOpener("Rat_Hippocampal_Neuron.zip")

New Fiji News,fiji.Wiki_Editor("news")

New Fiji Tutorial,fiji.Wiki_Editor("tutorial-maker")

New Fiji Wiki Screenshot,fiji.Wiki_Editor("screenshot")

New Hyperstack...,ij.plugin.HyperStackMaker

New Image5D,sc.fiji.i5d.plugin.New_Image5D("")

New Video,video2.New_Video

Next Slice [>],ij.plugin.Animator("next")

Nile Bend,ij.plugin.URLOpener("NileBend.jpg")

Normalize Local Contrast,mpicbg.ij.plugin.NormalizeLocalContrast

North,ij.plugin.filter.Shadows("north")

Northeast,ij.plugin.filter.Shadows("northeast")

Northwest,ij.plugin.filter.Shadows("northwest")

Nrrd ...,sc.fiji.io.Nrrd_Reader

Nrrd ... ,sc.fiji.io.Nrrd_Writer

OME-TIFF...,loci.plugins.LociExporter("")

Open,ij.plugin.filter.Binary("open")

Open as Panel,ij.plugin.SimpleCommands("opencp")

Open Current Image,command:bdv.ij.OpenImagePlusPlugIn

Open Current Image With Labkit,command:sc.fiji.labkit.ui.plugin.LabkitPlugin

Open Image File With Labkit,command:sc.fiji.labkit.ui.plugin.LabkitImportPlugin

Open Image5D,sc.fiji.i5d.plugin.Open_Image5D("")

Open Imaris (experimental),command:bdv.ij.OpenImarisPlugIn

Open Series As Image5D,sc.fiji.i5d.plugin.Open_Series_As_Image5D("")

Open Video,video2.Open_Video

Open XML/HDF5,command:bdv.ij.BigDataViewerPlugIn

Options...,ij.plugin.filter.Binary("options")

OR...,ij.plugin.filter.ImageMath("or")

Organ of Corti (4D stack),ij.plugin.URLOpener("organ-of-corti.zip")

Out [-],ij.plugin.Zoom("out")

Outline,ij.plugin.filter.Binary("outline")

Page Setup...,ij.plugin.filter.Printer("setup")

Pairwise stitching,plugin.Stitching_Pairwise

Panorama equirectangular view,mpicbg.panorama.Panorama_View

Particle Analyzer (3D),process3d.Particle_Analyzer_3D

Particles,ij.plugin.URLOpener("particles.gif")

Paste Control...,ij.plugin.frame.PasteController

PDF ...,sc.fiji.io.PDF_Viewer

PDF ... ,sc.fiji.io.PDF_Writer

PGM...,ij.plugin.filter.Writer("pgm")

Phase Map,sc.fiji.timelapse.Phase_Map

PIV analysis,fiji.plugin.pivanalyser.PIV_analyser

Plasma Cloud,script:Examples/Plasma_Cloud.rb

Plot XY Profile,ij.plugin.StackPlotter

Plot Z-axis Profile,ij.plugin.ZAxisProfiler

Plots...,ij.plugin.Profiler("set")

Plugin,ij.plugin.NewPlugin("plugin")

Plugin Filter,ij.plugin.NewPlugin("filter")

Plugin Frame,ij.plugin.NewPlugin("frame")

Plugin Tool,ij.plugin.NewPlugin("plugin-tool")

Plugins,ij.plugin.SimpleCommands("showdirPlugins")

PNG...,ij.plugin.filter.Writer("png")

Point Tool...,ij.plugin.PointToolOptions

Points from Mask,fiji.selection.Binary_to_Point_Selection

Prepare Cover Maker Database,script:Examples/CoverMaker/Prepare_Cover_Maker_Database.py

Previous Slice [<],ij.plugin.Animator("previous")

Proxy Settings...,ij.plugin.ProxySettings

Put Behind [tab],ij.plugin.Commands("tab")

Quantile Based Normalization,util.Quantile_Based_Normalization

Quit,ij.plugin.Commands("quit")

Radial Gradient,fiji.drawing.Radial_Gradient

Radial Reslice,fiji.stacks.Radial_Reslice

random noise example,script:Examples/random_noise_example.clj

Raw Data...,ij.plugin.filter.Writer("raw")

Raw...,ij.plugin.Raw

Re-order Hyperstack ...,fiji.stacks.Hyperstack_rearranger

Re-plot Lanes,ij.plugin.GelAnalyzer("replot")

Read Reconstruct Project...,edu.utexas.clm.reconstructreader.reconstruct.Reconstruct_Reader

Rebin (3D),process3d.Rebin_

Reciprocal,ij.plugin.filter.ImageMath("reciprocal")

Reconstruct Dataset,QuickPALM.Reconstruct_Dataset

Record Desktop,script:Plugins/Utilities/Record_Desktop.py

Record Window,script:Plugins/Utilities/Record_Window.py

Record...,ij.plugin.frame.Recorder

Red,ij.plugin.LutLoader("red")

Red/Green,ij.plugin.LutLoader("redgreen")

Redisplay Power Spectrum,ij.plugin.FFT("redisplay")

Reduce Dimensionality...,ij.plugin.HyperStackReducer

Reduce...,ij.plugin.StackReducer

Refresh Menus,ij.plugin.ImageJ_Updater("menus")

Register Virtual Stack Slices,register_virtual_stack.Register_Virtual_Stack_MT

Release Notes...,ij.plugin.BrowserLauncher("https://wsr.imagej.net/notes.html")

Remove Detections by Distance,spim.fiji.plugin.ThinOut_Detections

Remove Detections Interactively,spim.fiji.plugin.Interactive_Remove_Detections

Remove NaNs...,ij.plugin.filter.RankFilters("nan")

Remove Outliers,mpicbg.ij.plugin.RemoveOutliers

Remove Outliers...,ij.plugin.filter.RankFilters("outliers")

Remove Overlay,ij.plugin.OverlayCommands("remove")

Remove Shortcut...,ij.plugin.Hotkeys("remove")

Remove Slice Labels,ij.plugin.SimpleCommands("remove")

Remove Slope,Remove_Slope

Rename...,ij.plugin.SimpleCommands("rename")

Repeat a Recent Command,fiji.util.Recent_Commands

Replace Red with Magenta,fiji.color.Convert_Red_To_Magenta

Replace value,Replace_Value

Report a Bug,Bug_Submitter.Bug_Submitter

Resample,vib.Resample_

Reset,ij.plugin.GelAnalyzer("reset")

Reset...,ij.plugin.SimpleCommands("reset")

Reset... ,ij.plugin.Options("reset")

Reslice [/]...,ij.plugin.Slicer

Reslice Z,Reslice_Z

Results to Image,ij.plugin.SimpleCommands("rtoi")

Results...,ij.plugin.MeasurementsWriter

Results... ,ij.plugin.SimpleCommands("import")

Retinex,Retinex_

Reverse,ij.plugin.StackReverser

RGB Color,ij.plugin.Converter("RGB Color")

RGB Stack,ij.plugin.Converter("RGB Stack")

RGB to CIELAB,RGB_to_CIELAB

RGB to Image5D,sc.fiji.i5d.plugin.RGB_to_Image5D("")

RGB to Luminance,util.RGB_to_Luminance

Ridge Detection,de.biomedical_imaging.ij.steger.Lines_

Rigid Registration,vib.RigidRegistration_

ROF Denoise,fiji.denoise.ROF_Denoise

Roi Defaults...,ij.gui.RoiDefaultsDialog

ROI Manager...,ij.plugin.frame.RoiManager

Rotate 90 Degrees Left,ij.plugin.filter.Transformer("left")

Rotate 90 Degrees Right,ij.plugin.filter.Transformer("right")

Rotate...,ij.plugin.Selection("rotate")

Rotate... ,ij.plugin.filter.Rotator

Rounded Rect Tool...,ij.plugin.RectToolOptions

Run Script from File,command:org.scijava.batch.FileScriptBatchProcessor

Run Script from Menu,command:org.scijava.batch.MenuScriptBatchProcessor

Run...,ij.plugin.Macro_Runner

Salt and Pepper,ij.plugin.filter.SaltAndPepper

Same Slice in Multiple Images,script:Examples/Same_Slice_in_Multiple_Images.rb

Sample Variance,mpicbg.ij.plugin.SampleVariance

Save Image5D,sc.fiji.i5d.plugin.Save_Image5D("")

Save Particles (.tif file - fast),QuickPALM.Save_particles_table2img

Save to HDF5 File (append)...,sc.fiji.hdf5.HDF5_Writer_Vibez("append")

Save XY Coordinates...,ij.plugin.XYCoordinates

Scale Bar...,ij.plugin.ScaleBar

Scale to DPI,script:Image/Adjust/Scale_to_DPI.js

Scale to Fit,ij.plugin.Zoom("scale")

Scale... ,ij.plugin.RoiScaler

Script Interpreter,command:org.scijava.ui.swing.script.ScriptInterpreterPlugin

Script...,command:org.scijava.ui.swing.script.ScriptEditor

Scriptable load HDF5...,sc.fiji.hdf5.HDF5_Simple_Reader

Scriptable save HDF5 (append)...,sc.fiji.hdf5.HDF5_Simple_Writer("append")

Seam remover,Seam_Remover

Search Bar...,command:net.imagej.legacy.search.SearchOptions

Search...,ij.plugin.SimpleCommands("search")

Segment blob in 3D Viewer,ij3d.segmentation.Blob_Segmentation_in_3D

Segment Image With Labkit,command:sc.fiji.labkit.ui.plugin.SegmentImageWithLabkitPlugin

Segmentation Editor,Segmentation_Editor

Select Bounding Box,fiji.selection.Select_Bounding_Box

Selection...,ij.plugin.filter.RoiWriter

Series Labeler,Series_Labeler

Set Active Axis...,command:net.imagej.plugins.commands.axispos.SetActiveAxis

Set Channel Display,sc.fiji.i5d.plugin.Set_Channel_Display("")

Set Channel Labels,sc.fiji.i5d.plugin.Set_Channel_Labels("")

Set Color By Wavelength,script:Image/Color/Set_Color_By_Wavelength.ijm

Set Label...,ij.plugin.SimpleCommands("set")

Set Measurements...,ij.plugin.filter.Analyzer("set")

Set Position,sc.fiji.i5d.plugin.Set_Position("")

Set Scale...,ij.plugin.filter.ScaleDialog

Set Slice...,ij.plugin.Animator("set")

Set...,ij.plugin.filter.ImageMath("set")

Set... ,ij.plugin.Zoom("set")

Shadows Demo,ij.plugin.filter.Shadows("demo")

Shape Index Map,fiji.geom.Shape_Index_Map

Shape-based averaging,Rohlfing_SBA

Sharpen,ij.plugin.filter.Filters("sharpen")

Show Amira Surface,isosurface.AmiraSurface

Show Circular Masks...,ij.plugin.filter.RankFilters("masks")

Show Color Surfaces,isosurface.Show_Colour_Surfaces

Show label centers,Show_Label_Centers

Show LSMToolbox,LSM_Toolbox("")

Show LUT,ij.plugin.filter.LutViewer

Show Overlay,ij.plugin.OverlayCommands("show")

Simulate Color Blindness,Daltonize_

Sintered Alumina (2.6MB),ij.plugin.URLOpener("http://fiji.sc/samples/Sintered_Alumina.tif.zip")

Size...,ij.plugin.Resizer

Skeletonize,ij.plugin.filter.Binary("skel")

Skeletonize (2D/3D),sc.fiji.skeletonize3D.Skeletonize3D_

Slice Keeper,Slice_Keeper

Slice Remover,Slice_Remover

Smooth (3D),process3d.Smooth_

South,ij.plugin.filter.Shadows("south")

Southeast,ij.plugin.filter.Shadows("southeast")

Southwest,ij.plugin.filter.Shadows("southwest")

Specify Calibration,spim.fiji.plugin.Specify_Calibration

Specify...,ij.plugin.SpecifyROI

Spectrum,ij.plugin.LutLoader("spectrum")

Spheres and Tubes in 3D,customnode.Mesh_Maker

SPIM,spimopener.SPIM_Opener

Spirals ,script:File/Open_Samples/Spirals_.ijm

Spline Deformation Generator,SplineDeformationGenerator.SplineDeformationGenerator_

Split Channels,ij.plugin.ChannelSplitter

Square,ij.plugin.filter.ImageMath("sqr")

Square Root,ij.plugin.filter.ImageMath("sqrt")

Stack Difference,sc.fiji.multiKymograph.StackDifference_

Stack From List...,ij.plugin.ListVirtualStack

Stack Slicer,loci.plugins.Slicer("")

Stack Sorter,Stack_Sorter

Stack Splitter,Stack_Splitter

Stack to Hyperstack...,ij.plugin.HyperStackConverter("stacktohs")

Stack to Image5D,sc.fiji.i5d.plugin.Stack_to_Image5D("")

Stack to Images,ij.plugin.StackEditor("toimages")

Stack to RGB,ij.plugin.RGBStackConverter

Standard Deviation,mpicbg.ij.plugin.StandardDeviation

Start Animation [\],ij.plugin.Animator("start")

Start Cluster...,edu.utexas.clm.archipelago.Fiji_Archipelago("gui")

start viewer,view5d.View5D_("")

Startup Macros...,ij.plugin.Commands("startup")

Startup...,ij.plugin.Startup

Statistical Region Merging,SRM_

Statistics,ij.plugin.Stack_Statistics

Stitch Collection of Images,Stitch_Image_Collection

Stitch Grid of Images,Stitch_Image_Grid

Stitch Sequence of Grids of Images,Stitch_Image_Grid_Sequence

Stop Animation,ij.plugin.Animator("stop")

Straight Lines,script:File/Open_Samples/Straight_Lines.ijm

Straighten...,ij.plugin.Straightener

Stress Test,edu.utexas.clm.archipelago.example.Stress_Test("")

Striped Circles,script:File/Open_Samples/Striped_Circles.ijm

Subtract Background...,ij.plugin.filter.BackgroundSubtracter

Subtract...,ij.plugin.filter.ImageMath("sub")

Summarize,ij.plugin.filter.Analyzer("sum")

Surface Plot...,ij.plugin.SurfacePlotter

SurfaceJ,SurfaceJ_

Surfaceness,features.Surfaceness_

SVG...,sc.fiji.io.SVG_Reader

Swap Quadrants,ij.plugin.FFT("swap")

Sync Measure 3D,Sync_Measure_3D("")

Sync Measure 3D...,Sync_Measure_3D("about")

Sync Windows,Sync_Windows("")

Sync Windows...,Sync_Windows("about")

Synchronize Windows,ij.plugin.frame.SyncWindows

System Information,command:org.scijava.plugins.commands.debug.SystemInformation

T1 Head (16-bits),ij.plugin.URLOpener("t1-head.zip")

T1 Head Renderings,ij.plugin.URLOpener("t1-rendering.zip")

T2 Select All,script:Examples/TrakEM2_Example_Scripts/T2_Select_All.py

T2 set all transforms to identity,script:Examples/TrakEM2_Example_Scripts/T2_set_all_transforms_to_identity.py

Table... ,ij.plugin.SimpleCommands("table")

Table... ,command:org.scijava.table.io.ExportTableCommand

Task Monitor Bar...,command:net.imagej.legacy.task.TaskMonitorOptions

TEM Filter,ij.plugin.URLOpener("TEM_filter_sample.jpg")

temp,ij.plugin.SimpleCommands("showdirTemp")

Temporal-Color Code,script:Image/Hyperstacks/Temporal-Color_Code.ijm

Test Block Matching Parameters,mpicbg.ij.plugin.BlockMatching_TestParameters

Test Cluster,edu.utexas.clm.archipelago.example.Test_Cluster("")

Test Java3D,Test_Java3D

Test Marching Cubes,MC_Test

Text File... ,ij.plugin.TextFileReader

Text Image...,ij.plugin.filter.Writer("text")

Text Image... ,ij.plugin.TextReader

Text Window...,ij.plugin.NewPlugin("text+dialog")

Text...,ij.plugin.TextWriter

The Hue Game,script:Examples/The_Hue_Game.bsh

Thread killer,Thread_Killer

Threads,ij.plugin.ThreadLister

TIFF Virtual Stack...,ij.plugin.FileInfoVirtualStack

Tiff...,ij.plugin.filter.Writer("tiff")

Tile,ij.plugin.WindowOrganizer("tile")

Time Stamper,Time_Stamper

To Bounding Box,ij.plugin.Selection("tobox")

To ROI Manager,ij.plugin.OverlayCommands("to")

To Selection,ij.plugin.Zoom("to")

ToAST,ToAST25_

Toggle Cluster Processing,spim.fiji.plugin.Toggle_Cluster_Options

Toggle Overlay,ij.plugin.OverlayCommands("toggle")

Top Hat...,ij.plugin.filter.RankFilters("tophat")

TorstenRaw GZ Reader...,sc.fiji.io.TorstenRaw_GZ_Reader

TrackMate,fiji.plugin.trackmate.TrackMateRunner

Tracks for TrackMate (807K),ij.plugin.URLOpener("http://fiji.sc/samples/FakeTracks.tif")

Trainable Segmentation,trainableSegmentation.Trainable_Segmentation

Trainable Segmentation 2D,edu.utexas.archipelago.plugin.Batch_Weka_Segmentation

Trainable Weka Segmentation,trainableSegmentation.Weka_Segmentation

Trainable Weka Segmentation 3D,trainableSegmentation.Weka_Segmentation("3D")

TrakEM2 (blank),ini.trakem2.New_Project("blank")

TrakEM2 (from template),ini.trakem2.New_Project

TrakEM2 Folder Watcher,fsalign.FS_Align_TrakEM2

TrakEM2 XML...,ini.trakem2.Open_Project

Transfer Channel Settings,sc.fiji.i5d.plugin.Transfer_Channel_Settings("")

Transform Virtual Stack Slices,register_virtual_stack.Transform_Virtual_Stack_MT

Translate...,ij.plugin.filter.Translator

Translate... ,ij.plugin.Selection("translate")

Tree Rings,ij.plugin.URLOpener("Tree_Rings.jpg")

Triangle Algorithm,Triangle_Algorithm

Tubeness,features.Tubeness_

Ultimate Points,ij.plugin.filter.EDM("points")

Unsharp Mask...,ij.plugin.filter.UnsharpMask

Update Bio-Formats Plugins,loci.plugins.Updater("")

Update ImageJ...,ij.plugin.ImageJ_Updater

Update QuickPALM,QuickPALM.Run_MyMacro("Update_.txt")

Update...,command:net.imagej.ui.swing.updater.ImageJUpdater

Upload Image to Fiji Wiki,fiji.Upload_Image_To_Wiki

Upload Sample Image...,command:net.imagej.plugins.commands.upload.SampleImageUploader

URL...,ij.plugin.URLOpener

V3Draw...,Vaa3d_Writer

Vaa3d...,org.janelia.vaa3d.reader.Vaa3d_Reader

Variance 3D...,ij.plugin.Filters3D("var")

Variance...,ij.plugin.filter.RankFilters("variance")

VIB Protocol,VIB_Protocol

Vibez validate...,sc.fiji.hdf5.Vibez_Validate

View5D ,view5d.View5D_

Virtual Image5D Opener,sc.fiji.i5d.plugin.Virtual_Image5D_Opener("")

Virtual Stack...,ij.plugin.BatchProcessor("stack")

Visual grep,Visual_Grep

Visualize Detections,spim.fiji.plugin.Visualize_Detections

Visualize OME Metadata,command:sc.fiji.omevisual.OMEVisual

Volume Calculator,volumeCalculator.Volume_Calculator

Volume Reconstructor,Volume_Reconstructor_

Volume Viewer,fiji.plugin.volumeviewer.Volume_Viewer

VolumeJ,VolumeJ_

Voronoi,ij.plugin.filter.EDM("voronoi")

Walking Average,sc.fiji.multiKymograph.WalkingAverage_

Wand Tool...,ij.plugin.WandToolOptions

Watch Events,command:org.scijava.ui.swing.commands.WatchEvents

Watershed,ij.plugin.filter.EDM("watershed")

Wavefront .OBJ ...,marchingcubes.ExportMesh_

West,ij.plugin.filter.Shadows("west")

Window/Level...,ij.plugin.frame.ContrastAdjuster("wl")

Write Reconstruct Project...,edu.utexas.clm.reconstructreader.trakem2.Reconstruct_Writer

XOR...,ij.plugin.filter.ImageMath("xor")

XPM ...,sc.fiji.io.XPM_Writer

XY Coordinates...,ij.plugin.filter.XYWriter

XY Coordinates... ,ij.plugin.XY_Reader

Yellow,ij.plugin.LutLoader("yellow")

Z Project,sc.fiji.i5d.plugin.Z_Project("")

Z Project...,ij.plugin.ZProjector

Z-Spacing Correction,org.janelia.thickness.plugin.ZPositionCorrection

ZIP...,ij.plugin.filter.Writer("zip")