Hi ,

I wanted to run your code for a gene/protein tagger. So I downloaded and extracted the zip file from Quick Start section. I was running the code to annotate the given files using
./neji.sh -i example/annotate/in/ -if RAW -o example/annotate/out/ -of JSON -m resources/models/ -t 1

I am getting a java.lang.StackOverflowError error. It would be great if you could help.

Error:

Exception in thread "main" java.lang.StackOverflowError at java.lang.ReflectiveOperationException.<init>(ReflectiveOperationException.java:89) at java.lang.reflect.InvocationTargetException.<init>(InvocationTargetException.java:72) at sun.reflect.GeneratedMethodAccessor1.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1058) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2136) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2027) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1535) at java.io.ObjectInputStream.readObject(ObjectInputStream.java:422) at java.util.Hashtable.readObject(Hashtable.java:1204) at sun.reflect.GeneratedMethodAccessor1.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1058) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2136) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2027) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1535) at java.io.ObjectInputStream.readObject(ObjectInputStream.java:422) at java.util.Hashtable.readObject(Hashtable.java:1204) at sun.reflect.GeneratedMethodAccessor1.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1058) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2136) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2027) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1535) at java.io.ObjectInputStream.readObject(ObjectInputStream.java:422) at java.util.Hashtable.readObject(Hashtable.java:1204) at sun.reflect.GeneratedMethodAccessor1.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1058) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2136)