Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Author and PDB assigned chain identifiers #348

Open
ajipalar opened this issue May 5, 2023 · 1 comment
Open

Author and PDB assigned chain identifiers #348

ajipalar opened this issue May 5, 2023 · 1 comment

Comments

@ajipalar
Copy link

ajipalar commented May 5, 2023 •
edited
Loading

The Protein Data Bank mmcif standard assigns two identifiers for protein chains, an author assigned chain id auth_asym_id and a pdb assigned chain id label_asym_id. Base on two examples of the hhblits summary list in .hhr files, hhblits appears to report the author chain id.

  • 6YWE_11
  • 7RRO_H7

It would be good to clarify this in the user guide. Perhaps it has been discussed already but I haven't seen it.
@ajipalar
Copy link
Author

Looks like you have a tool for this - renumberpdb.pl. Does this tool come with the conda version?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@ajipalar