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.pre-commit-config.yaml
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49 lines (49 loc) · 1.48 KB
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repos:
- repo: https://github.com/astral-sh/ruff-pre-commit
rev: v0.14.14
hooks:
- id: ruff-check # linter
args: [--fix, --exit-non-zero-on-fix] # sort imports and fix
- id: ruff-format # formatter
- repo: https://github.com/pre-commit/mirrors-prettier
rev: "v3.1.0"
hooks:
- id: prettier
entry: prettier --experimental-cli --write --ignore-unknown --no-cache
additional_dependencies:
- repo: https://github.com/pre-commit/pre-commit-hooks
rev: v6.0.0
hooks:
- id: trailing-whitespace
args: [--markdown-linebreak-ext=md]
exclude: |
(?x)^(
.*\.snap$|
nf_core/pipeline-template/subworkflows/.*|
nf_core/pipeline-template/modules/.*|
tests/pipelines/__snapshots__/.*
)$
- id: end-of-file-fixer
exclude: |
(?x)^(
.*\.snap$|
nf_core/pipeline-template/subworkflows/.*|
nf_core/pipeline-template/modules/.*|
tests/pipelines/__snapshots__/.*
)$
- repo: https://github.com/pre-commit/mirrors-mypy
rev: "v1.19.1"
hooks:
- id: mypy
additional_dependencies:
- types-PyYAML
- types-requests
- types-jsonschema
- types-Markdown
- types-setuptools
- pydantic
- repo: https://github.com/astral-sh/uv-pre-commit
rev: 0.9.28
hooks:
- id: uv-lock