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Description
Description of feature
Hello, first of all thank you for your effort in maintaining and improving the pipeline.
I noticed that .tab
files produced by deeptools take up a lot of space even though they can be compressed to ~15% of the original size.
This is the size of all files in the results folder grouped by extension :
[...]
49.7M .broadPeak
52.2M .xls
65.5M .bed
68.7M .gappedPeak
238.9M .txt
1.1G .bigWig
1.4G .gz
2.9G .fa
9.2G .bam
13.3G .tab
27.9G <NoExtension>
56.5G Total
After compressing the .tab
files with the default options of gzip:
[...]
49.7M .broadPeak
52.2M .xls
65.5M .bed
68.7M .gappedPeak
238.9M .txt
1.1G .bigWig
2.9G .gz
2.9G .fa
9.2G .bam
27.9G <NoExtension>
44.7G Total
The majority of tab files come from results/star/merged_library/deeptools/plotprofile/
.
Furthermore, when building a star index the genome used is copied uncompressed in results/genome/
, which can be compressed to easily recover ~2GB of space.
Thank you!
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