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Description
Description of the bug
Hi,
I want to ask why I use latesest version, but my results is still macs2, not macs3.
Here is my command line:
nextflow run nf-core/atacseq -resume -c nextflow.config --input /project/sli68423_1316/users/yang/workspace/nanome/related_proje
ct/aml_nanopore/atac/00samplesheet_atac.csv --outdir results_mll_atac_hg38 -profile singularity --genome GRCh38 --read_length 50 -
-narrow_peak
Here is output directory:
ls bwa/merged_library/
ataqv D3_REP1.mLb.clN.sorted.bam D6_REP1.mLb.clN.sorted.bam deeptools
bigwig D3_REP1.mLb.clN.sorted.bam.bai D6_REP1.mLb.clN.sorted.bam.bai macs2
D1_REP1.mLb.clN.sorted.bam D4_REP1.mLb.clN.sorted.bam D7_REP1.mLb.clN.sorted.bam picard_metrics
D1_REP1.mLb.clN.sorted.bam.bai D4_REP1.mLb.clN.sorted.bam.bai D7_REP1.mLb.clN.sorted.bam.bai samtools_stats
D2_REP1.mLb.clN.sorted.bam D5_REP1.mLb.clN.sorted.bam D8_REP1.mLb.clN.sorted.bam
D2_REP1.mLb.clN.sorted.bam.bai D5_REP1.mLb.clN.sorted.bam.bai D8_REP1.mLb.clN.sorted.bam.bai
Command used and terminal output
nextflow run nf-core/atacseq -resume -c nextflow.config --input /project/sli68423_1316/users/yang/workspace/nanome/related_proje
ct/aml_nanopore/atac/00samplesheet_atac.csv --outdir results_mll_atac_hg38 -profile singularity --genome GRCh38 --read_length 50 -
-narrow_peak
Relevant files
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System information
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