FROM nvidia/cuda:11.4.2-devel-ubuntu20.04 AS builder

# Solve cmake asking for timezone: https://dev.to/setevoy/docker-configure-tzdata-and-timezone-during-build-20bk
ENV TZ=America/Vancouver
RUN ln -snf /usr/share/zoneinfo/$TZ /etc/localtime && echo $TZ > /etc/timezone

ARG RACON_GIT_HASH=a2cfcac281d312a73912a97d6d960404f516c389
# Checkout git version: https://stackoverflow.com/q/3555107
RUN apt-get update && \
    apt-get install -y git cmake zlib1g-dev && \
    git clone --recursive https://github.com/lbcb-sci/racon.git racon && \
    cd racon && \
    git reset --hard ${RACON_GIT_HASH} && \
    git submodule update && \
    mkdir build && \
    cd build && \
    cmake -DCMAKE_BUILD_TYPE=Release -Dracon_enable_cuda=ON .. && \
    make && \
    apt-get remove -y git cmake && \
    rm -rf /var/lib/apt/lists/*

Scanning dependencies of target gwbase
[  1%] Building CXX object _deps/genomeworks-build/common/base/CMakeFiles/gwbase.dir/src/cudautils.cpp.o
In file included from /racon/build/_deps/genomeworks-src/3rdparty/spdlog/include/spdlog/fmt/fmt.h:21,
                 from /racon/build/_deps/genomeworks-src/3rdparty/spdlog/include/spdlog/common.h:28,
                 from /racon/build/_deps/genomeworks-src/3rdparty/spdlog/include/spdlog/spdlog.h:12,
                 from /racon/build/_deps/genomeworks-src/common/base/include/claraparabricks/genomeworks/logging/logging.hpp:99,
                 from /racon/build/_deps/genomeworks-src/common/base/include/claraparabricks/genomeworks/utils/cudautils.hpp:22,
                 from /racon/build/_deps/genomeworks-src/common/base/src/cudautils.cpp:17:
/racon/build/_deps/genomeworks-src/3rdparty/spdlog/include/spdlog/fmt/bundled/format.h:3475:55: warning: ISO C++ did not adopt string literal operator templates taking an argument pack of characters [-Wpedantic]
 3475 | FMT_CONSTEXPR internal::udl_formatter<Char, CHARS...> operator""_format() {
      |                                                       ^~~~~~~~
[  3%] Building CXX object _deps/genomeworks-build/common/base/CMakeFiles/gwbase.dir/src/logging.cpp.o
In file included from /racon/build/_deps/genomeworks-src/3rdparty/spdlog/include/spdlog/fmt/fmt.h:21,
                 from /racon/build/_deps/genomeworks-src/3rdparty/spdlog/include/spdlog/common.h:28,
                 from /racon/build/_deps/genomeworks-src/3rdparty/spdlog/include/spdlog/spdlog.h:12,
                 from /racon/build/_deps/genomeworks-src/common/base/include/claraparabricks/genomeworks/logging/logging.hpp:99,
                 from /racon/build/_deps/genomeworks-src/common/base/src/logging.cpp:17:
/racon/build/_deps/genomeworks-src/3rdparty/spdlog/include/spdlog/fmt/bundled/format.h:3475:55: warning: ISO C++ did not adopt string literal operator templates taking an argument pack of characters [-Wpedantic]
 3475 | FMT_CONSTEXPR internal::udl_formatter<Char, CHARS...> operator""_format() {
      |                                                       ^~~~~~~~
[  5%] Building CXX object _deps/genomeworks-build/common/base/CMakeFiles/gwbase.dir/src/graph.cpp.o
[  7%] Linking CXX static library ../../../../lib/libgwbase.a
[  7%] Built target gwbase
[  9%] Building NVCC (Device) object _deps/genomeworks-build/cudaaligner/CMakeFiles/cudaaligner.dir/src/cudaaligner_generated_hirschberg_myers_gpu.cu.o
[ 11%] Building NVCC (Device) object _deps/genomeworks-build/cudaaligner/CMakeFiles/cudaaligner.dir/src/cudaaligner_generated_ukkonen_gpu.cu.o
[ 13%] Building NVCC (Device) object _deps/genomeworks-build/cudaaligner/CMakeFiles/cudaaligner.dir/src/cudaaligner_generated_myers_gpu.cu.o
Scanning dependencies of target cudaaligner
[ 15%] Building CXX object _deps/genomeworks-build/cudaaligner/CMakeFiles/cudaaligner.dir/src/cudaaligner.cpp.o
In file included from /racon/build/_deps/genomeworks-src/3rdparty/spdlog/include/spdlog/fmt/fmt.h:21,
                 from /racon/build/_deps/genomeworks-src/3rdparty/spdlog/include/spdlog/common.h:28,
                 from /racon/build/_deps/genomeworks-src/3rdparty/spdlog/include/spdlog/spdlog.h:12,
                 from /racon/build/_deps/genomeworks-src/common/base/include/claraparabricks/genomeworks/logging/logging.hpp:99,
                 from /racon/build/_deps/genomeworks-src/cudaaligner/src/cudaaligner.cpp:18:
/racon/build/_deps/genomeworks-src/3rdparty/spdlog/include/spdlog/fmt/bundled/format.h:3475:55: error: ISO C++ did not adopt string literal operator templates taking an argument pack of characters [-Werror=pedantic]
 3475 | FMT_CONSTEXPR internal::udl_formatter<Char, CHARS...> operator""_format() {
      |                                                       ^~~~~~~~
cc1plus: all warnings being treated as errors
make[2]: *** [_deps/genomeworks-build/cudaaligner/CMakeFiles/cudaaligner.dir/build.make:84: _deps/genomeworks-build/cudaaligner/CMakeFiles/cudaaligner.dir/src/cudaaligner.cpp.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:1976: _deps/genomeworks-build/cudaaligner/CMakeFiles/cudaaligner.dir/all] Error 2
make: *** [Makefile:152: all] Error 2
The command '/bin/sh -c apt-get update &&     apt-get install -y git cmake zlib1g-dev &&     git clone --recursive https://github.com/lbcb-sci/racon.git racon &&     cd racon &&     git reset --hard ${RACON_GIT_HASH} &&     git submodule update &&     mkdir build &&     cd build &&     cmake -DCMAKE_BUILD_TYPE=Release -Dracon_enable_cuda=ON .. &&     make &&     apt-get remove -y git cmake &&     rm -rf /var/lib/apt/lists/*' returned a non-zero code: 2