Package: g2f

Type: Package

Title: Find and Fill Gaps in Metabolic Networks

Version: 0.3

Authors@R: c(person("Kelly","Botero",role=c("aut")),

person("Daniel","Osorio",email="[email protected]",role=c("aut","cre")),

person("Nicolas","Mendoza-Mejia",role=c("aut")),

person("Felipe","Rojas-Rodriguez",role=c("aut")),

person("Janneth","Gonzalez",role=c("aut","ths")),

person("Andres","Pinzon", role=c("aut","ths"))

)

Description: For a given metabolic network, this package finds the gaps (metabolites not produced or not consumed in any other reaction), and fills it from the stoichiometric reactions of a reference metabolic reconstruction using a weighting function. Also the option to download all the set of gene-associated stoichiometric reactions for a specific organism from the KEGG database <http://www.genome.jp/kegg/> is available.

Imports: KEGGREST, minval (>= 0.5), sybil

License: GPL-2

LazyData: TRUE

RoxygenNote: 7.1.1

BugReports: https://github.com/gibbslab/g2f/issues