src/git.html

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<head>
    <meta charset="utf-8">
    <meta http-equiv="x-ua-compatible" content="ie=edge">
    <meta name="viewport" content="width=device-width,initial-scale=1">
    <title>Git</title>

    <link rel="stylesheet" href="//cdn.datatables.net/1.10.16/css/jquery.dataTables.min.css">
    <link rel="stylesheet" href="/css/bootstrap.min.css">
    <link rel="stylesheet" href="/css/main.css">
    <link rel="stylesheet" href="/css/chart.css">

</head>
<body>
<header>
    <div class="blur_background">
        <div class="mask"></div>
    </div>

    <div class="container">
        <div class="row">
            <div class="col-xs-12">
                <h1>Git</h1>
                <h2>PATHOS issues from v1.4.7 to v1.5.0</h2>
            </div>
        </div>
    </div>
</header>
<div class="container-fluid dataviz-page">
    <section>
        <div class="row" id="dataset">
<!--             <div class="col-xs-12 col-md-4"></div> -->
            <div class="col-xs-12 largeTable">
                <table>
                    <thead><tr></tr></thead>
                    <tbody></tbody>
                </table>
                <div class="download_csv_link"><a target="_blank" href="/pmac/git.tsv">Download CSV</a></div>
            </div>
        </div>
    </section>

    <section>
        <div class="row" id="andy">
            <div class="col-xs-12 col-md-6"></div>
            <div class="col-xs-12 col-md-6">
<!--                 <a target="_blank" href="AndyKriebel.jpg"><img src="AndyKriebel.jpg"></a> -->
<!--                 <span>U.S. Influenza Surveilance Report by <a target="_blank" href="https://www.cdc.gov/flu/weekly/#S11">CDC</a></span> -->
            </div>
        </div>

        <div class="row">
            <div class="col-xs-12 col-sm-8 col-sm-offset-2" id="andy_remake"></div>
        </div>
    </section>

</div>

<footer>
    <div class="container">
        <div class="row">
            <p class="col-xs-6">Simple <a href="https://github.com/david-ma/Thalia">Thalia</a> Bootstrap Boilerplate</p>
            <p class="col-xs-6 text-right">By <a href="https://twitter.com/frostickle">@Frostickle</a> <i class="fab fa-twitter" aria-hidden="true"></i></p>
        </div>
    </div>
</footer>
<script src="/js/vendor.min.js"></script>
<script src="/js/topojson.js"></script>
<script src="/js/bootstrap.bundle.min.js"></script>

<script src="/js/chart.js"></script>
<script src="//cdn.datatables.net/1.10.16/js/jquery.dataTables.min.js"></script>
<script src="//cdn.rawgit.com/showdownjs/showdown/1.8.6/dist/showdown.min.js"></script>

<script>
    const charts = [];
    let data = [];
    const seasons = {};

    log("Calling csv stuff");
    d3.csv("/pmac/jira.csv", function(d, i, columns){
        const season = d.SEASON;

        // List of which fields are integers...
        const integers = ["AGE 0-4", "AGE 5-24", "AGE 25-49", "AGE 25-64", "AGE 50-64", "AGE 65", "ILITOTAL", "TOTAL PATIENTS", "NUMBER OF PROVIDERS", "WEEK"];
        integers.forEach(function(field){
            d[field] = parseInt(d[field]) || "";
        });

        const floats = ["%UNWEIGHTED ILI", "% WEIGHTED ILI"];
        floats.forEach(function(field){
            d[field] = parseFloat(d[field]) || "";
        });

        seasons[season] = seasons[season] || [];
        seasons[season].push(d);

        return d;
    }).then(function(dataset){
        log("Start async stuff");
        if(window.location.hash !== "#skip") {
            decorateTable(dataset);
        }
        drawChart(dataset);
        log("Finish async stuff");
    });

    function decorateTable(dataset) {
        log("Start decorating table");
        $("#dataset table").dataTable({
            data: dataset,
            pageLength: 25,
            columns: dataset.columns.map(function(d){ return {
                title: d,
                data: d
            };})
        });

        log("Finished decorating table");
    }

    function drawChart(data){
        log("Start drawing chart");
        // OK.. let's do a viz
//        console.log(data);

        const andy_remake = new Chart({
            element: "andy_remake",
            data: data,
            width: 600,
            height: 400,
            nav: false,
            title: "Influenza-like Illness (ILI) in 2017-2018",
            xLabel: "Week",
            yLabel: "Number Reported of ILI Cases",
            margin: {
                top: 50,
                bottom: 70,
                left: 70,
                right: 50
            }
        }).scratchpad(function(c){
            const   svg = c.plot,
                    width = c.innerWidth,
                    height = c.innerHeight,
                    data = c.data;
//                    data = seasons['2017-18'];
//                            .sort((a,b) => a.WEEK - b.WEEK);

            console.log("Just looking at 2017-18", data);

            // Set the ranges
            const x = d3.scaleLinear().range([0, width]);
            const y = d3.scaleLinear().range([height, 0]);

            // Define the line
            var line = d3.line()
                .x(function(d, i) { return x(i); })
                .y(function(d) { return y(d.ILITOTAL); });

            // Scale the range of the data
            x.domain(d3.extent(data, (d, i) => i));
            y.domain([0, 1.05 * d3.max(data, (d) => d.ILITOTAL)]);


            // Add the line path.
             svg.append("path")
                 .data([seasons['2017-18']])
                 .attr("class", "line")
                 .attr("d", line);

            // Add the X Axis
            svg.append("g")
                .attr("class", "axis")
                .attr("transform", `translate(0, ${height})`)
                .call(
                    d3.axisBottom(x)
//                        .tickValues(data.map((d) => d.WEEK))
//                        .tickValues(function(d){ return [1,2,3] })
                );


            // Add the Y Axis
            svg.append("g")
                .attr("class", "axis")
                .call(d3.axisLeft(y));


             return;
            // y.domain([0, d3.max(weeks, function(d) { return d.value; })]);
            // this.plot.append("path")
            //     .data([weeks])
            //     .attr("class", "line")
            //     .style("stroke", "red")
            //     .attr("d", valueline.x(function(d) { return x(d.week); }));

            y.domain([0, d3.max(months, function(d) { return d.value; })]);
            this.plot.append("path")
                .data([months])
                .attr("class", "line")
                .style("stroke", "black")
                .attr("d", valueline.x(function(d) { return x(d.month); }));


            var that = this;

            console.log("Here is our sample data", sampleData);

            Object.keys(sampleData).forEach(function(sample, i){
                console.log("doing sample...", sample);
                var data = {};

                sampleData[sample].forEach(function(point){
                    data[point.date] = data[point.date] || {
                        rawDate: point.rawDate,
                        value: 0
                    };
                    data[point.date].value += point.value;
                });
                console.log(data);

                data = Object.keys(data).map(function(date){
                    return {
                        date: parseTime(data[date].rawDate),
                        value: data[date].value
                    };
                });

                that.plot.append("path")
                    .data([data])
                    .attr("class", "line")
                    .style("stroke", that.colours[i])
                    .attr("d", valueline.x(function(d) { return x(d.date); }));
            });


        });
        charts.push(andy_remake);
        log("Finish drawing chart");
    }


/**
 * Markdown stuff goes here...
 */
    const md = new showdown.Converter({
        openLinksInNewWindow: true
    });


    $("#dataset>div:first-child").html(md.makeHtml(`
# Influenza Dataset

All #MakeoverMonday datasets can be found [here](http://www.makeovermonday.co.uk/data/)


[//]: # (The blogpost is [here](http://www.makeovermonday.co.uk/week-24-2018/);)

> **Report:** [U.S. Influenza Surveilance Report](https://www.cdc.gov/flu/weekly/#S11)
>
> **Source:** [CDC](https://gis.cdc.gov/grasp/fluview/fluportaldashboard.html)

    `));

    $("#andy>div:first-child").html(md.makeHtml(`
# Percentage of Visits for Influenza-like Illness (ILI)
## from [CDC](https://gis.cdc.gov/grasp/fluview/fluportaldashboard.html) - [original](https://www.cdc.gov/flu/weekly/#S11)

Reported by the U.S. Outpatient Influenza-like Illness Surveillance Network (ILINet), Weekly National Summary, 2017-2018 and Selected Previous Seasons

> **Report:** [U.S. Influenza Surveilance Report](https://www.cdc.gov/flu/weekly/#S11)
>
> **Source:** [CDC](https://gis.cdc.gov/grasp/fluview/fluportaldashboard.html)

`));


</script>


</body>
</html>