R version 4.0.3 (2020-10-10)

Platform: x86_64-pc-linux-gnu (64-bit)

Running under: Ubuntu 20.04.5 LTS

Matrix products: default

BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3

LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3

locale:

[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C

[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8

[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8

[7] LC_PAPER=en_US.UTF-8 LC_NAME=C

[9] LC_ADDRESS=C LC_TELEPHONE=C

[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:

[1] grid parallel stats4 stats graphics grDevices utils

[8] datasets methods base

other attached packages:

[1] ComplexHeatmap_2.6.2 scater_1.18.6

[3] SingleCellExperiment_1.12.0 GSEABase_1.52.1

[5] graph_1.68.0 annotate_1.68.0

[7] XML_3.99-0.5 AnnotationDbi_1.52.0

[9] dittoSeq_1.2.6 escape_1.0.1

[11] DESeq2_1.30.1 SummarizedExperiment_1.20.0

[13] Biobase_2.50.0 MatrixGenerics_1.2.1

[15] matrixStats_0.58.0 GenomicRanges_1.42.0

[17] GenomeInfoDb_1.26.7 IRanges_2.24.1

[19] S4Vectors_0.28.1 BiocGenerics_0.36.1

[21] kableExtra_1.3.1 knitr_1.31

[23] sctransform_0.3.2 ggpubr_0.4.0

[25] ggrepel_0.9.1 ggplot2_3.3.3

[27] openxlsx_4.2.3 readxl_1.3.1

[29] Matrix_1.2-18 dplyr_1.0.4

[31] umap_0.2.7.0 cowplot_1.1.1

[33] Seurat_3.2.3

loaded via a namespace (and not attached):

[1] reticulate_1.18 tidyselect_1.1.0

[3] RSQLite_2.2.3 htmlwidgets_1.5.3

[5] BiocParallel_1.24.1 Rtsne_0.15

[7] munsell_0.5.0 codetools_0.2-16

[9] ica_1.0-2 future_1.21.0

[11] miniUI_0.1.1.1 withr_3.0.0

[13] colorspace_2.0-0 highr_0.8

[15] rstudioapi_0.13 ROCR_1.0-11

[17] ggsignif_0.6.0 tensor_1.5

[19] listenv_0.8.0 labeling_0.4.2

[21] GenomeInfoDbData_1.2.4 polyclip_1.10-0

[23] farver_2.0.3 pheatmap_1.0.12

[25] bit64_4.0.5 parallelly_1.23.0

[27] vctrs_0.6.5 generics_0.1.0

[29] xfun_0.21 R6_2.5.1

[31] clue_0.3-58 ggbeeswarm_0.6.0

[33] rsvd_1.0.3 msigdbr_7.2.1

[35] locfit_1.5-9.4 bitops_1.0-6

[37] spatstat.utils_2.0-0 cachem_1.0.3

[39] DelayedArray_0.16.3 assertthat_0.2.1

[41] promises_1.1.1 scales_1.1.1

[43] beeswarm_0.2.3 gtable_0.3.0

[45] beachmat_2.6.4 Cairo_1.5-12.2

[47] globals_0.14.0 goftest_1.2-2

[49] rlang_1.1.4 genefilter_1.72.1

[51] GlobalOptions_0.1.2 splines_4.0.3

[53] rstatix_0.6.0 lazyeval_0.2.2

[55] broom_0.7.4 yaml_2.2.1

[57] reshape2_1.4.4 abind_1.4-5

[59] backports_1.2.1 httpuv_1.5.5

[61] tools_4.0.3 ellipsis_0.3.2

[63] RColorBrewer_1.1-2 ggridges_0.5.3

[65] Rcpp_1.0.6 plyr_1.8.6

[67] sparseMatrixStats_1.2.1 zlibbioc_1.36.0

[69] purrr_1.0.2 RCurl_1.98-1.2

[71] rpart_4.1-15 openssl_2.2.0

[73] deldir_0.2-9 GetoptLong_1.0.5

[75] viridis_0.5.1 pbapply_1.4-3

[77] zoo_1.8-8 haven_2.3.1

[79] cluster_2.1.0 magrittr_2.0.3

[81] data.table_1.13.6 RSpectra_0.16-0

[83] scattermore_0.7 circlize_0.4.12

[85] lmtest_0.9-38 RANN_2.6.1

[87] fitdistrplus_1.1-3 GSVA_1.38.2

[89] hms_1.0.0 patchwork_1.1.1

[91] mime_0.9 evaluate_0.24.0

[93] xtable_1.8-4 rio_0.5.16

[95] shape_1.4.5 gridExtra_2.3

[97] compiler_4.0.3 tibble_3.0.6

[99] KernSmooth_2.23-17 crayon_1.4.1

[101] htmltools_0.5.8.1 mgcv_1.8-33

[103] later_1.1.0.1 tidyr_1.1.2

[105] geneplotter_1.68.0 DBI_1.1.1

[107] MASS_7.3-53 car_3.0-10

[109] cli_3.6.3 igraph_1.2.6

[111] forcats_0.5.1 pkgconfig_2.0.3

[113] foreign_0.8-80 scuttle_1.0.4

[115] plotly_4.9.3 xml2_1.3.2

[117] vipor_0.4.5 webshot_0.5.2

[119] XVector_0.30.0 rvest_0.3.6

[121] stringr_1.4.0 digest_0.6.36

[123] RcppAnnoy_0.0.18 spatstat.data_2.0-0

[125] rmarkdown_2.6 cellranger_1.1.0

[127] leiden_0.3.7 edgeR_3.32.1

[129] uwot_0.1.10 DelayedMatrixStats_1.12.3

[131] curl_5.2.1 shiny_1.6.0

[133] rjson_0.2.20 lifecycle_1.0.4

[135] nlme_3.1-149 jsonlite_1.8.8

[137] BiocNeighbors_1.8.2 carData_3.0-4

[139] limma_3.46.0 viridisLite_0.3.0

[141] askpass_1.1 pillar_1.4.7

[143] lattice_0.20-41 fastmap_1.2.0

[145] httr_1.4.2 survival_3.2-7

[147] glue_1.4.2 zip_2.1.1

[149] spatstat_1.64-1 png_0.1-7

[151] bit_4.0.4 stringi_1.5.3

[153] blob_1.2.1 BiocSingular_1.6.0

[155] memoise_2.0.1 irlba_2.3.3

[157] future.apply_1.7.0