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061324_sessionInfo.txt
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061324_sessionInfo.txt
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R version 4.0.3 (2020-10-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04.5 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] grid parallel stats4 stats graphics grDevices utils
[8] datasets methods base
other attached packages:
[1] ComplexHeatmap_2.6.2 scater_1.18.6
[3] SingleCellExperiment_1.12.0 GSEABase_1.52.1
[5] graph_1.68.0 annotate_1.68.0
[7] XML_3.99-0.5 AnnotationDbi_1.52.0
[9] dittoSeq_1.2.6 GSVA_1.38.2
[11] escape_1.0.1 DESeq2_1.30.1
[13] SummarizedExperiment_1.20.0 Biobase_2.50.0
[15] MatrixGenerics_1.2.1 matrixStats_0.58.0
[17] GenomicRanges_1.42.0 GenomeInfoDb_1.26.7
[19] IRanges_2.24.1 S4Vectors_0.28.1
[21] BiocGenerics_0.36.1 kableExtra_1.3.1
[23] knitr_1.31 sctransform_0.3.2
[25] ggpubr_0.4.0 ggrepel_0.9.1
[27] openxlsx_4.2.3 readxl_1.3.1
[29] Matrix_1.2-18 umap_0.2.7.0
[31] cowplot_1.1.1 forcats_0.5.1
[33] stringr_1.4.0 dplyr_1.0.4
[35] purrr_1.0.2 readr_1.4.0
[37] tidyr_1.1.2 tibble_3.0.6
[39] ggplot2_3.3.3 tidyverse_1.3.0
[41] Seurat_3.2.3
loaded via a namespace (and not attached):
[1] scattermore_0.7 bit64_4.0.5
[3] irlba_2.3.3 DelayedArray_0.16.3
[5] data.table_1.13.6 rpart_4.1-15
[7] RCurl_1.98-1.2 generics_0.1.0
[9] RSQLite_2.2.3 RANN_2.6.1
[11] future_1.21.0 bit_4.0.4
[13] spatstat.data_2.0-0 webshot_0.5.2
[15] xml2_1.3.2 lubridate_1.7.9.2
[17] httpuv_1.5.5 assertthat_0.2.1
[19] viridis_0.5.1 xfun_0.21
[21] hms_1.0.0 evaluate_0.24.0
[23] promises_1.1.1 dbplyr_2.1.0
[25] igraph_1.2.6 DBI_1.1.1
[27] geneplotter_1.68.0 htmlwidgets_1.5.3
[29] ellipsis_0.3.2 RSpectra_0.16-0
[31] backports_1.2.1 deldir_0.2-9
[33] sparseMatrixStats_1.2.1 vctrs_0.6.5
[35] Cairo_1.5-12.2 ROCR_1.0-11
[37] abind_1.4-5 cachem_1.0.3
[39] withr_3.0.0 goftest_1.2-2
[41] cluster_2.1.0 lazyeval_0.2.2
[43] crayon_1.4.1 genefilter_1.72.1
[45] labeling_0.4.2 edgeR_3.32.1
[47] pkgconfig_2.0.3 nlme_3.1-149
[49] vipor_0.4.5 rlang_1.1.4
[51] globals_0.14.0 lifecycle_1.0.4
[53] miniUI_0.1.1.1 modelr_0.1.8
[55] rsvd_1.0.3 cellranger_1.1.0
[57] polyclip_1.10-0 lmtest_0.9-38
[59] carData_3.0-4 zoo_1.8-8
[61] reprex_1.0.0 beeswarm_0.2.3
[63] ggridges_0.5.3 GlobalOptions_0.1.2
[65] pheatmap_1.0.12 png_0.1-7
[67] viridisLite_0.3.0 rjson_0.2.20
[69] bitops_1.0-6 KernSmooth_2.23-17
[71] blob_1.2.1 DelayedMatrixStats_1.12.3
[73] shape_1.4.5 parallelly_1.23.0
[75] rstatix_0.6.0 ggsignif_0.6.0
[77] beachmat_2.6.4 scales_1.1.1
[79] memoise_2.0.1 magrittr_2.0.3
[81] plyr_1.8.6 ica_1.0-2
[83] zlibbioc_1.36.0 compiler_4.0.3
[85] RColorBrewer_1.1-2 clue_0.3-58
[87] fitdistrplus_1.1-3 cli_3.6.2
[89] XVector_0.30.0 listenv_0.8.0
[91] patchwork_1.1.1 pbapply_1.4-3
[93] MASS_7.3-53 mgcv_1.8-33
[95] tidyselect_1.1.0 stringi_1.5.3
[97] highr_0.8 yaml_2.2.1
[99] BiocSingular_1.6.0 askpass_1.1
[101] locfit_1.5-9.4 tools_4.0.3
[103] future.apply_1.7.0 rio_0.5.16
[105] circlize_0.4.12 rstudioapi_0.13
[107] foreign_0.8-80 gridExtra_2.3
[109] farver_2.0.3 Rtsne_0.15
[111] digest_0.6.35 shiny_1.6.0
[113] Rcpp_1.0.6 car_3.0-10
[115] broom_0.7.4 scuttle_1.0.4
[117] later_1.1.0.1 RcppAnnoy_0.0.18
[119] httr_1.4.2 colorspace_2.0-0
[121] rvest_0.3.6 fs_1.6.4
[123] tensor_1.5 reticulate_1.18
[125] splines_4.0.3 uwot_0.1.10
[127] spatstat.utils_2.0-0 plotly_4.9.3
[129] xtable_1.8-4 jsonlite_1.8.8
[131] spatstat_1.64-1 R6_2.5.1
[133] pillar_1.4.7 htmltools_0.5.8.1
[135] mime_0.9 glue_1.4.2
[137] fastmap_1.2.0 BiocParallel_1.24.1
[139] BiocNeighbors_1.8.2 codetools_0.2-16
[141] lattice_0.20-41 curl_5.2.1
[143] ggbeeswarm_0.6.0 leiden_0.3.7
[145] zip_2.1.1 openssl_2.2.0
[147] survival_3.2-7 limma_3.46.0
[149] rmarkdown_2.6 munsell_0.5.0
[151] GetoptLong_1.0.5 GenomeInfoDbData_1.2.4
[153] haven_2.3.1 reshape2_1.4.4
[155] gtable_0.3.0 msigdbr_7.2.1