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mikejiang
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Sep 23, 2015
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,41 +1,70 @@ | ||
| library(shiny) | ||
| library(shinydashboard) | ||
| library(DT) | ||
| navbarPage("OpenCyto", | ||
| tabsetPanel(tabPanel("Data",{ | ||
| navlistPanel( | ||
| tabPanel("Import", | ||
| tags$br(), | ||
| div(div(shinyDirButton("dir_btn",label = "choose...", title = "Please select a folder", buttonType = "primary") | ||
| ,style="display:inline-block;") | ||
| , div(textInput("path_import",label = "workspaces path"), style="display:inline-block;") | ||
| ,div(actionButton(inputId = "refresh_import",label = "Scan") | ||
| ,style="display:inline-block;") | ||
| ,style="display:inline-block;"), | ||
| div(h6(DT::dataTableOutput(outputId = "file_table",))), | ||
| actionButton("parse_chosen",label="Import Files"), | ||
| hidden(div(div(actionButton("parseGroup",label = "Parse Workspace"),style="display:inline-block;"),div(uiOutput("workspaceGroups"),style="display:inline-block"),div(textOutput("nsamples"),style="display:inline-block"),style='width:90%',id="parseUI")), | ||
| div(verbatimTextOutput("message1"),style='width:90%') | ||
| ), | ||
|
|
||
| tabPanel("Load", | ||
| div(div(h5("Existing Data"),style="display:inline-block"), | ||
| div(div(textInput("path",label = "path",value = "../inst/extdata"),style="display:inline-block"),actionButton(inputId = "refresh",label = "Scan"),style="display:inline-block"),style="display:inline-block"), | ||
| div(h6(DT::dataTableOutput(outputId = "existing_data")), style = 'width:90%;'), | ||
| actionButton(inputId = "load",label = "Load Data"), | ||
| div(verbatimTextOutput("message"),style='width:90%') | ||
|
|
||
| ),useShinyjs() | ||
| # ,extendShinyjs(script = "www/actions.js") | ||
| ,id="datanavlist" | ||
| ) | ||
|
|
||
| }), | ||
|
|
||
| tabPanel("Compensate & Transform","Compensate & Transform"), | ||
| tabPanel("Gating Template","Build a Gating Template"), | ||
| tabPanel("Tree","View Gating Tree", | ||
| div(div(diagonalNetworkOutput("tree",width="400px",height="300px"), | ||
| style="display:inline-block;float:left;"),div(imageOutput("gateplot",width = "300px",height="300px"),style="margin-left:400px;"),style="width:100%;height:100%;") | ||
| ),id = "tabset" | ||
| ) | ||
|
|
||
| sidebar <- dashboardSidebar( | ||
| useShinyjs(), | ||
| sidebarMenu( | ||
| menuItem("Data", tabName = "Data", | ||
| menuSubItem("Import workspaces", tabName = "Import", icon = icon("arrow-right"), selected = TRUE), | ||
| menuSubItem("Load GatingSets", tabName = "Load", icon = icon("folder-open")) | ||
| , icon = icon("database") | ||
| ), | ||
| menuItem("Compensate & Transform", tabName = "Compensate", icon = icon("exchange")), | ||
| menuItem("Build a Gating Template",tabName = "GatingTemplate", icon = icon("table")), | ||
| menuItem("View Gating Tree", tabName = "Tree", icon = icon("bar-chart")) | ||
| ) | ||
| ) | ||
|
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||
|
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|
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| body <- dashboardBody( | ||
| tabItems( | ||
| tabItem("Data", title = "Data", h1("Please choose submenu: 'Import workspaces' or 'Load GatingSet'")), | ||
| tabItem("Import", | ||
| box( | ||
| shinyDirButton("dir_btn",label = "choose...", title = "Please select a folder", buttonType = "primary"), | ||
| textInput("path_import",label = "workspaces path"), | ||
| actionButton(inputId = "refresh_import",label = "Scan"), | ||
| div(h6(DT::dataTableOutput(outputId = "file_table",))), | ||
| actionButton("parse_chosen",label="Import Files"), | ||
| hidden(div(div(actionButton("parseGroup",label = "Parse Workspace"),style="display:inline-block;"),div(uiOutput("workspaceGroups"),style="display:inline-block"),div(textOutput("nsamples"),style="display:inline-block"),style='width:90%',id="parseUI")), | ||
| div(verbatimTextOutput("message1"),style='width:90%'), | ||
| title = "Import workspaces", solidHeader = TRUE, status = "primary" | ||
| ) | ||
| ), | ||
| tabItem("Load", | ||
| box( | ||
| div(div(h5("Existing Data"),style="display:inline-block"), | ||
| div(div(textInput("path",label = "path",value = "../inst/extdata"),style="display:inline-block"),actionButton(inputId = "refresh",label = "Scan"),style="display:inline-block"),style="display:inline-block"), | ||
| div(h6(DT::dataTableOutput(outputId = "existing_data")), style = 'width:90%;'), | ||
| actionButton(inputId = "load",label = "Load Data"), | ||
| div(verbatimTextOutput("message"),style='width:90%'), | ||
| title = "Load GatingSets", solidHeader = TRUE, status = "primary" | ||
| ) | ||
| ), | ||
| # ,extendShinyjs(script = "www/actions.js") | ||
|
|
||
|
|
||
| tabItem("Compensate", | ||
| box(title = "Compensate & Transform", solidHeader = TRUE, status = "primary") | ||
| ), | ||
| tabItem("GatingTemplate", | ||
| box(title = "Build a Gating Template", solidHeader = TRUE, status = "primary") | ||
| ), | ||
| tabItem("Tree", | ||
| box( | ||
| div(div(diagonalNetworkOutput("tree",width="400px",height="300px"), | ||
| style="display:inline-block;float:left;"),div(imageOutput("gateplot",width = "300px",height="300px"),style="margin-left:400px;"),style="width:100%;height:100%;" | ||
| ), | ||
| title = "View Gating Tree", solidHeader = TRUE, status = "primary" | ||
| ) | ||
| ) | ||
| ) | ||
| ) | ||
|
|
||
| dashboardPage( | ||
| dashboardHeader(title = "OpenCyto"), | ||
| sidebar, | ||
| body | ||
|
|
||
| ) |