This repository was archived by the owner on Jun 4, 2024. It is now read-only.

Commits

Commits on May 18, 2017

making changes to new db_id_name_mapping file format
adamjohnwright
committed

Commits on Apr 2, 2017

making it so that output dominant state file is not filtered by keyoutputs
adamjohnwright
committed

Commits on Mar 26, 2017

removing heatmap script
adamjohnwright
committed

Commits on Mar 14, 2017

Merge remote-tracking branch 'origin/develop' into develop
adamjohnwright
committed
adding sort order for outputting files - makes them consitent
adamjohnwright
committed

Commits on Feb 27, 2017

Merge tag '0.5.3' into develop
Adam Wright
committed
Merge branch 'release/0.5.3'
Adam Wright
committed
fixing type with Dockerfile
Adam Wright
committed

Commits on Feb 26, 2017

adding Dockerfile
Adam Wright
committed

Commits on Jan 23, 2017

sorting output so that the order is consistent when creating a pp.tsv file
adamjohnwright
committed

Commits on Jan 17, 2017

changing how the headers get named
adamjohnwright
committed

Commits on Jan 12, 2017

Commits on Jan 9, 2017

changing column names in key outputs file
adamjohnwright
committed

Commits on Dec 16, 2016

added changes to use with generic csv obs fil
adamjohnwright
committed

Commits on Dec 12, 2016

fixing issues with skipping first two lines when reading tsv interaction files
adamjohnwright
committed

Commits on Dec 11, 2016

Commits on Oct 13, 2016

changed snv and copynumber generateion of obs file to only include root nodes
Cristina Baciu
committed
made it so that we only use root nodes for making obersvation file with gistic
Cristina Baciu
committed

Commits on Oct 6, 2016

fixed the changing of node state to two when the dominant probability is less than 0.5
Cristina Baciu
committed
forgot open bracket
Cristina Baciu
committed

Commits on Oct 5, 2016

Update Bio.pm
adamjohnwright
authored

Commits on Sep 30, 2016

getting rid of debug print statements

Cristina Baciu
authored and
Cristina Baciu
committed
key outputs is working and tested for gistic_to_dominant_state_table.pl and is identical for copy_number_to_dominant_state_table.pl but was not tested for the later
adamjohnwright
committed

Commits on Sep 29, 2016

gistic_to_dominant_state_table.pod

Cristina Baciu
authored and
Cristina Baciu
committed
Merge branch 'develop' of https://github.com/OICR/PGMLab into develop

Cristina Baciu
authored and
Cristina Baciu
committed

Commits on Sep 26, 2016

fixed add pseudonodes
adamjohnwright
committed

Commits on Sep 12, 2016

fixed pointer to function name change - was not lining up
Cristina Baciu
committed

Commits on Aug 31, 2016

made it so that the key outputs come from a tab delimited file provided by reactome.
adamjohnwright
committed

Commits on Aug 26, 2016

Merge pull request #41 from OICR/feature/redux
adamjohnwright
authored
delete extra crossbar config
mdpham
authored
action_types module for reducers/action_creators
Martin Pham
committed
heatmap cleanup
Martin Pham
committed